Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0498.Seq
(504 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 54 4e-08
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 54 5e-08
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 54 5e-08
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 54 5e-08
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 54 5e-08
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 54 5e-08
At4g16970.1 68417.m02559 protein kinase family protein contains ... 28 3.1
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 54.4 bits (125), Expect = 4e-08
Identities = 38/113 (33%), Positives = 52/113 (46%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K PIR+G G + T CKVT + +A
Sbjct: 138 GAIILAKLSVV-PIRRGYWGNKIGKPH-TVPCKVTGKC--GSVTVRMVPAPRGSGIVAAR 193
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWRISR 106
+PK ++ G+ D+ T RGST TLGNF K + KTY + TP+ W+ +R
Sbjct: 194 VPKKVLQFAGIDDVFTSS-RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETR 245
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 54.0 bits (124), Expect = 5e-08
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + +A
Sbjct: 147 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVTVRMVPAPRGSGIVAAR 202
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWRISR 106
+PK ++ G+ D+ T RGST TLGNF K + KTY + TP+ W+ +R
Sbjct: 203 VPKKVLQFAGIDDVFTSS-RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETR 254
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 54.0 bits (124), Expect = 5e-08
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + +A
Sbjct: 146 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVTVRMVPAPRGSGIVAAR 201
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWRISR 106
+PK ++ G+ D+ T RGST TLGNF K + KTY + TP+ W+ +R
Sbjct: 202 VPKKVLQFAGIDDVFTSS-RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETR 253
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 54.0 bits (124), Expect = 5e-08
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + +A
Sbjct: 146 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVTVRMVPAPRGSGIVAAR 201
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWRISR 106
+PK ++ G+ D+ T RGST TLGNF K + KTY + TP+ W+ +R
Sbjct: 202 VPKKVLQFAGIDDVFTSS-RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETR 253
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 54.0 bits (124), Expect = 5e-08
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + +A
Sbjct: 146 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVTVRMVPAPRGSGIVAAR 201
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWRISR 106
+PK ++ G+ D+ T RGST TLGNF K + KTY + TP+ W+ +R
Sbjct: 202 VPKKVLQFAGIDDVFTSS-RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETR 253
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 54.0 bits (124), Expect = 5e-08
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = -1
Query: 444 GAIXLCKXXXFXPIRKGLLGLTXWESXKTALCKVTRXXLVPKIPGXXXXXXXXXXXXSAP 265
GAI L K P+R+G G + T CKVT + +A
Sbjct: 146 GAIILAKLSVV-PVRRGYWGNKIGKPH-TVPCKVTGKC--GSVTVRMVPAPRGSGIVAAR 201
Query: 264 IPKNFFRWLGVQDLLTGQLRGSTGTLGNFAKPHTXPIAKTYAYXTPDLWRISR 106
+PK ++ G+ D+ T RGST TLGNF K + KTY + TP+ W+ +R
Sbjct: 202 VPKKVLQFAGIDDVFTSS-RGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETR 253
>At4g16970.1 68417.m02559 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 868
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 326 SLKFRVDXCPLRGYGYCCLRQFLRTSSDGLVYR 228
SLK +D L+ YGYC + G+V+R
Sbjct: 463 SLKREIDVYQLQWYGYCMFKALSSLHKQGVVHR 495
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,821,230
Number of Sequences: 28952
Number of extensions: 147456
Number of successful extensions: 246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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