Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0494.Seq
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 38 0.003
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 31 0.24
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 30 0.54
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.72
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 29 1.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 1.3
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 28 1.7
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 28 2.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 2.2
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 27 2.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 3.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.8
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 26 6.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 8.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 8.8
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 26 8.8
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 26 8.8
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 37.5 bits (83), Expect = 0.003
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 766 PIQYPRXWQLFRKVNFVL-XVEEIDLSKXXPXWET-LKV-XXXILQHXLAFFSGSNGLLN 936
PI+Y WQ ++K EEIDLSK W+ L + LA+F+ S+G++N
Sbjct: 80 PIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNKLNADERYFISTVLAYFAASDGIVN 139
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 31.1 bits (67), Expect = 0.24
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 88 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKAT 267
++D+ +P ++S K SP K+ +K ++A + TDE P D N + T
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSDFIRLNSEESVGT 645
Query: 268 MHLRT 282
LRT
Sbjct: 646 SSLRT 650
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 29.9 bits (64), Expect = 0.54
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +1
Query: 97 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP 237
K+E P E + +P SPV S K E +E K +DEAP+ +P
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAP 530
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.72
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 103 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAK 258
++ PE+ + + PVKK P+KK + A++N E DE + E K
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEK 108
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +1
Query: 94 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKATMH 273
D+ A +E + E E + + E E ++ T+E P+++P E K +T
Sbjct: 46 DEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETPKENPLEKLKQKASTAS 105
Query: 274 LRTVMP 291
V+P
Sbjct: 106 FYDVVP 111
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 1.3
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = -3
Query: 284 TVLRCIVAFFASPFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGAT 105
TV+ V +S + SS SSV + LLS++ F + F TG S S+ + +G+
Sbjct: 3484 TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSFSL-TSENGSV 3542
Query: 104 SFLSTAASAIV 72
S S +S+ V
Sbjct: 3543 SSSSLVSSSPV 3553
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 502 DCHCGDTIAA*TKILFKGNKQWAPTVDKENLHSG 603
+C CGD + NK W TVD E L G
Sbjct: 141 ECPCGDASMELLASRLENNKPWNLTVDSEKLMRG 174
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +1
Query: 115 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG----DAKKATMHLRT 282
E+ + EP E+P S KVE A + AP + A + KA L T
Sbjct: 94 EDEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSAPAAALPDEPPKALEVLHT 153
Query: 283 VMPQKRKRLV 312
++ QK K+ +
Sbjct: 154 LVAQKLKKSI 163
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 70 ATMADAAVDKKEVAPEEVTSTEPKESPVKK-SPAKKVEAAESNGKENGTDEAPEDSPAEN 246
++ D + K + + +S EP + VKK +KK E + S + + E S +E+
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 79 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG--D 252
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ D
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 253 AKK 261
KK
Sbjct: 236 EKK 238
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 115 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKK 261
+E + KES K++PA+K + + ENGT+E + PA+ +K
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRAT--ENGTEEGKK--PAKRTRKRK 97
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.9
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = -3
Query: 320 PLHTSLFLFCGITVLRCIVAFFASPFSAGESSGASSVPFSLPLLSAASTFL-AGDFLTG- 147
P TSL + T A +SP S S +SS S P S +S + + ++G
Sbjct: 587 PSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGS 646
Query: 146 DSFGSVEVTSSGATSFLSTAASAIV 72
S S +++ +S LST +S+++
Sbjct: 647 SSILSSSISTIPISSSLSTYSSSVI 671
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 744 NPRRLSXPYSIPPYXAIVQKSELRFGRRGNRFVQGXSGLG 863
N R LS PY+IP A V RR + V+ G G
Sbjct: 10 NVRNLSAPYNIPSQSARVAAGNAAINRRRSSPVENSPGNG 49
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +1
Query: 94 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKATMH 273
DK++ A ++ S E + K A K+E G +N ++ + E D +
Sbjct: 1282 DKQDTASKDKNSLETIDE--KMEDASKIEGDAKTGDDNEMEDLDKMEDLEKPDYAEEKDP 1339
Query: 274 LRTVMPQKRKRL 309
TVM + R R+
Sbjct: 1340 YITVMSELRSRI 1351
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 70 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 249
A A A + + +V+ + + +PK++PV S A + A N + T E +
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQ---ASENASDKKTKEKKSSGKQKIA 266
Query: 250 DAKK 261
KK
Sbjct: 267 SKKK 270
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 100 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 246
++V ++TS EPK + KSP +K + ++ T++ DS +N
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDN 1020
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 178 EAAESNGKENGTDEAPEDSPAENGD 252
E++E + ++N TDEA ED+ + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSD 379
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 718 PXKELCCXRTRGVCHXPIQYPRXWQLFRKVNFVLXVEE 831
P K L G P+QY W +F+ N +L EE
Sbjct: 21 PVKPLNYKTAIGNSSIPLQYRNYWDVFQANNVLLFPEE 58
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.8 bits (54), Expect = 8.8
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Frame = +1
Query: 73 TMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESN----------GKENGTDEA 222
T + AV +KE +EV T PK S +K S + S ++ +
Sbjct: 743 TFNEEAVKQKETE-KEVPPTGPKASEIKDSVSSNNAVPSSTFNFVSPFAAVSEKTNENNI 801
Query: 223 PEDSPAENGDAKKATM 270
P D+ NG+A K T+
Sbjct: 802 PNDTTKTNGNATKRTL 817
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,675
Number of Sequences: 5004
Number of extensions: 63486
Number of successful extensions: 240
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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