Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0494.Seq
(943 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase sm... 48 9e-06
At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase sm... 48 9e-06
At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase sm... 45 6e-05
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 36 0.051
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.27
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 33 0.36
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 32 0.63
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp... 32 0.63
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ... 32 0.63
At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related... 31 0.84
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 31 1.1
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 31 1.1
At4g31880.1 68417.m04531 expressed protein 31 1.1
At4g07380.1 68417.m01133 hypothetical protein 30 2.6
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 30 2.6
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 30 2.6
At5g21430.1 68418.m02535 DNAJ heat shock N-terminal domain-conta... 29 3.4
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 29 3.4
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 29 3.4
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 29 3.4
At5g46230.1 68418.m05689 expressed protein contains Pfam profile... 29 4.5
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 29 4.5
At1g76820.1 68414.m08939 expressed protein 29 4.5
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 29 5.9
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 5.9
At3g47780.1 68416.m05205 ABC transporter family protein transpor... 29 5.9
At3g24630.1 68416.m03093 hypothetical protein 29 5.9
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 29 5.9
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 29 5.9
At1g56660.1 68414.m06516 expressed protein 29 5.9
At1g09520.1 68414.m01067 expressed protein 29 5.9
At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si... 28 7.8
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si... 28 7.8
At2g25670.2 68415.m03077 expressed protein 28 7.8
At2g25670.1 68415.m03076 expressed protein 28 7.8
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 28 7.8
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 28 7.8
At1g04430.1 68414.m00434 dehydration-responsive protein-related ... 28 7.8
>At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 231
Score = 48.0 bits (109), Expect = 9e-06
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 757 CHXPIQYPRXWQLFRKVNFVL-XVEEIDLSKXXPXWET--LKVXXXILQHXLAFFSGSNG 927
C PIQYP+ W++++K EE+DLS+ WE ++H LAFF+ S+G
Sbjct: 18 CMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDG 77
Query: 928 LL 933
++
Sbjct: 78 IV 79
>At3g23580.1 68416.m02966 ribonucleoside-diphosphate reductase small
chain / ribonucleotide reductase nearly identical to
SP|P50651 Ribonucleoside-diphosphate reductase small
chain (EC 1.17.4.1) (Ribonucleotide reductase) (R2
subunit) {Arabidopsis thaliana}
Length = 341
Score = 48.0 bits (109), Expect = 9e-06
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 679 LRNGLDKNFEEFDPXKELCCXRTRGVCHXPIQYPRXWQLFRKVNFVL-XVEEIDLSKXXP 855
L+ G ++ EE + + L + + PI+Y W++++K EE+DLS
Sbjct: 4 LKEGQGRDMEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQ 63
Query: 856 XWETL-KVXXXILQHXLAFFSGSNGLL 933
WE L + H LAFF+ S+G++
Sbjct: 64 QWEALTDSEKHFISHILAFFAASDGIV 90
>At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 332
Score = 45.2 bits (102), Expect = 6e-05
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +1
Query: 757 CHXPIQYPRXWQLFRKVNFVL-XVEEIDLSKXXPXWETL--KVXXXILQHXLAFFSGSNG 927
C PI YP+ W++++K EE+DLS+ WE ++H LAFF+ S+G
Sbjct: 18 CMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFIKHVLAFFAASDG 77
Query: 928 LL 933
++
Sbjct: 78 IV 79
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 35.5 bits (78), Expect = 0.051
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 76 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDA 255
M D + PE+ EPK+ + P K+ EA + GK+ G E+ E GD
Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEGEAPKKEEEKKEGGDK 121
Query: 256 KK 261
K+
Sbjct: 122 KE 123
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 97 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKA 264
KKE + E+ +S+E + P KK PA K+ + + D++ EDS E KKA
Sbjct: 153 KKESSSEDDSSSE--DEPAKK-PAAKIAKPAAKDSSSSDDDSDEDSEDEKPATKKA 205
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 115 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 243
++V + KE VKK P KKVE+++ + E+ +E + PA+
Sbjct: 42 KDVIAAVQKEKAVKKVP-KKVESSDDSDSESEEEEKAKKVPAK 83
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 94 DKKEVAPE--EVTSTEPK--ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 243
+K E APE EV S P E +++PA AAE N EN ++E E++P E
Sbjct: 67 EKSESAPESTEVASEAPAAAEDNAEETPA----AAEENNDENASEEVAEETPDE 116
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 656 NTLFFMGDFVCTRFSPLIPL*RFSLSTVGAHCLLPLNS 543
+T+F F ++SPL+P F+LST G H NS
Sbjct: 9 DTVFLFSRFAGAKYSPLLPSPSFTLSTSGIHIRTKPNS 46
>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
component-related / COG complex component-related
similar to SP|Q96MW5 Conserved oligomeric Golgi complex
component 8 {Homo sapiens}; contains Pfam profile
PF04124: Dor1-like family
Length = 569
Score = 31.9 bits (69), Expect = 0.63
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 121 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKK 261
+ + + P KSP K + + ENG PE+ AEN +AK+
Sbjct: 507 ILAASSSQEPSNKSP-KVISTDTKDASENGVASQPEEKQAENPNAKE 552
>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 287
Score = 31.9 bits (69), Expect = 0.63
Identities = 16/74 (21%), Positives = 37/74 (50%)
Frame = +1
Query: 79 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAK 258
A++ ++ + + +E + +E+P K KK A ++ K +++ + + D+K
Sbjct: 161 AESDSEEDDSSDDEEDDSSEEETPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSK 220
Query: 259 KATMHLRTVMPQKR 300
K +H+ T P K+
Sbjct: 221 KPHVHVATPHPSKQ 234
>At4g00238.1 68417.m00030 DNA-binding storekeeper protein-related
contains Pfam PF04504: Protein of unknown function,
DUF573; similar to storekeeper protein GI:14268476
[Solanum tuberosum]
Length = 345
Score = 31.5 bits (68), Expect = 0.84
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +1
Query: 142 ESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKAT 267
ESP KS KK AAES ++G +E +SPA K+A+
Sbjct: 76 ESPAVKS-GKKEGAAESPAVKSGNNEGATESPAVKSGKKRAS 116
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 130 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 249
T+PK P + PA++ ++ + + DE+ ED +E G
Sbjct: 53 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKG 92
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 130 TEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG 249
T+PK P + PA++ ++ + + DE+ ED +E G
Sbjct: 136 TKPKAKPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKG 175
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Frame = +1
Query: 85 AAVDKKEVAPEEVTSTEPKESPVKKSPAK-----------KVEAAESNGKENGTDEAPED 231
A+ KKE + TS++ K PVK PAK S KE+ ++ E+
Sbjct: 785 ASSKKKEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGSASTPASKAKESASESESEE 844
Query: 232 SPAENGDAKKA 264
+P E A KA
Sbjct: 845 TPKEPEPATKA 855
>At4g07380.1 68417.m01133 hypothetical protein
Length = 168
Score = 29.9 bits (64), Expect = 2.6
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 94 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA-PEDSPAENGDAKKATM 270
D + + EEV+ E + K K E ++NG++NGT+ PE + E AKK +
Sbjct: 85 DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIADVEL-PAKKRVV 143
Query: 271 HLRTVMP--QKRKR 306
+ +P RKR
Sbjct: 144 KNKAGLPGVNSRKR 157
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 82 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPEDSPAENGDAK 258
+A + V P+ + +P+E+ ++ A++ EAAE+ G+E G + E +A
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGETQTQTEAEAM 475
Query: 259 KATM 270
+ +
Sbjct: 476 QEAL 479
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 106 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 234
V PEE++ ++PK+S A+K+E N KE T E P D+
Sbjct: 302 VNPEEISESKPKQS--VDEVARKIEGFHIN-KEGKTAEKPSDA 341
>At5g21430.1 68418.m02535 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile: PF00226
DnaJ domain;
Length = 218
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 145 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 240
SP + S EA G DEAP++SP+
Sbjct: 44 SPARNSSEVSAEAETEGGSSTAVDEAPKESPS 75
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 82 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKK 261
D AV V S+ KE ++ +KK+E AE +EN +E + + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 262 ATMHLRTVMPQK 297
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 82 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKK 261
D AV V S+ KE ++ +KK+E AE +EN +E + + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 262 ATMHLRTVMPQK 297
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +1
Query: 97 KKEVAPEEVTSTEPKESPVKK--SPAKKVEAAESNGKENGTDE-APEDSPAE-NGDAKKA 264
K+E + T P ++K S A K E NG NG E A ED P+ + D K
Sbjct: 51 KQEHEAKSSKRTRPASKVIEKDASEASKEETPSENGMNNGDHEVASEDGPSSVSKDPAKT 110
Query: 265 TMHLRTVMPQKRKRL 309
T P+ K L
Sbjct: 111 TERFAPREPKPPKVL 125
>At5g46230.1 68418.m05689 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 143
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 783 TGVL-NRXMTNAAGSPAAEFLXWVELFEIFIESIPQSNVIF 664
T +L NR M+ G + E L WV + EIF+ + + F
Sbjct: 84 TAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDPTQITF 124
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 91 VDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKK 261
+D+ E PE+V + + V+++ +K E + GKE +E E + D K+
Sbjct: 309 IDENET-PEKVDTESKEVESVEETTQEKEEEVKEEGKERVEEEEKEKEKVKEDDQKE 364
>At1g76820.1 68414.m08939 expressed protein
Length = 266
Score = 29.1 bits (62), Expect = 4.5
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +1
Query: 76 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVE--AAESNGKENGTDEA-PED-SPAE 243
+ ++A KK + T ++ + K A+ E AA E D+A PE +P E
Sbjct: 167 LVESARSKKHKKKNKSGRTLQEDDDLDKLLAELGETPAAGKPASEEEKDQAQPEPVAPVE 226
Query: 244 NGDAKKATMHLRTVMPQKRKR 306
N K+ LR + P+KRKR
Sbjct: 227 NTGEKEKRRLLRLLQPRKRKR 247
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 133 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKATMHLRTVMPQKRKRL 309
EPK+ +E+ +S+ +ENG ED +G+ + +KRKRL
Sbjct: 31 EPKKRRKVSYDDDDIESVDSDAEENGFTGGDEDGRRVDGEVEDEDEFADETAGEKRKRL 89
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 94 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAA-----ESNGKENGTDEAPEDSPAENGDAK 258
DKKE EEV S PK KK +K EAA ES +++ + +D +N D++
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKDKKKKNKDSE 561
>At3g47780.1 68416.m05205 ABC transporter family protein transport
protein ABC-C, Homo sapiens, PIR2:S71363
Length = 935
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +1
Query: 502 DCHCGDTIAA*TKILFKGNKQWAPTVDKENLHSGINGENRVQTKSPMKNSVLATKNDI*L 681
D C T + ILF GN + T ENL + N + + N+VL T +
Sbjct: 122 DDSCRRTGSCPVTILFTGNNRSLGTTVSENLFTSSVSANASEILRTLANNVLGTTVEADF 181
Query: 682 RNGLD 696
N LD
Sbjct: 182 TNYLD 186
>At3g24630.1 68416.m03093 hypothetical protein
Length = 724
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 112 PEEVTSTEPKESPVKKSPAKKVEAAESNG-KENGTDEAPEDSPAENGDAKKATMHLRTVM 288
P+ + + ++ VKK+ + E N +E PE++P+EN +R V
Sbjct: 276 PDILKLSSERQEKVKKNSKESPEIVRCNSTREAALQSLPEETPSENPSTIVLIRPMRVVK 335
Query: 289 PQ 294
P+
Sbjct: 336 PE 337
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 115 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE----APEDSPAENGDA 255
+E S+E +E VK + + E E+ + +G+D+ A ++SP +G+A
Sbjct: 8 DEAFSSEEEEERVKDNEEEDEEELEAVARSSGSDDDEVAAADESPVSDGEA 58
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +1
Query: 67 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 246
L T + V + EV P EP+E PV +P VE + N T EA S ++N
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVET-----RLNLTVEAASSSSSDN 194
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 94 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE 243
+K E PEE KE + +K E E +GK+N E E E
Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEE 189
>At1g09520.1 68414.m01067 expressed protein
Length = 260
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 100 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKAT 267
KE A + + E E V +K + KE D+ P+ SPA NG K T
Sbjct: 165 KEAALAKKRAREALEQVVMLDAKEKARSVVPKLKEAPVDQKPKLSPASNGATVKET 220
>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase GI:1419374 from [Homo
sapiens]
Length = 1024
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 735 AEFLXWVELFEIFIESIPQSNVIFRSQYTIFHGRLRLHTV 616
A+FL W+ L + I + +++ + +TI G+L +H V
Sbjct: 4 AKFLCWIVLL-LGISLVESRYMVYNTSHTIVPGKLNVHVV 42
>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase GI:1419374 from [Homo
sapiens]
Length = 921
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 735 AEFLXWVELFEIFIESIPQSNVIFRSQYTIFHGRLRLHTV 616
A+FL W+ L + I + +++ + +TI G+L +H V
Sbjct: 4 AKFLCWIVLL-LGISLVESRYMVYNTSHTIVPGKLNVHVV 42
>At2g25670.2 68415.m03077 expressed protein
Length = 318
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +1
Query: 97 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKATMHL 276
K+ A E +++ K+ K+ K+ + ++N + DEA P E +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 277 RTVMPQKRKR 306
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At2g25670.1 68415.m03076 expressed protein
Length = 318
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/70 (20%), Positives = 30/70 (42%)
Frame = +1
Query: 97 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAKKATMHL 276
K+ A E +++ K+ K+ K+ + ++N + DEA P E +
Sbjct: 209 KENAAGGESKASKKKKKKDKQKEVKESQEQQANNNADAVDEAAGSEPTEEESPIDVKERI 268
Query: 277 RTVMPQKRKR 306
+ + K+K+
Sbjct: 269 KKLASMKKKK 278
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 589 NLHSGINGENRVQTKSPMKNSVLATKNDI*LRNGLDKNFEEFDPXK 726
++ + IN ++R + S MKNS T R LD+N+ F+P K
Sbjct: 69 SIPASINQQSRQRQSSAMKNSDPETARR--RRESLDRNWAAFEPPK 112
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 109 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDS 234
A + TS E K+S KS + +GK+ EAPE++
Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENN 256
>At1g04430.1 68414.m00434 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 623
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 272 CIVAFFAS---PFSAGESSGASSVPFSLPLLSAASTFLAGDFLTGDS 141
C+VA F + S GAS++ + L S++L+GD GD+
Sbjct: 19 CVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDDNGDT 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,288,941
Number of Sequences: 28952
Number of extensions: 329454
Number of successful extensions: 1197
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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