Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0493.Seq
         (832 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4P706 Cluster: Putative uncharacterized protein; n=1; ...    35   2.9  
UniRef50_Q96C86 Cluster: Scavenger mRNA-decapping enzyme DcpS; n...    33   6.6  
UniRef50_P68713 Cluster: Protein A19; n=33; Poxviridae|Rep: Prot...    33   8.8  

>UniRef50_Q4P706 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 714

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +2

Query: 383 LLAATAAGNGIGIDTVDSGHRGFVNRGHHDHGLRCRT 493
           +LAA AA  G+ I  VDSGH     RG  D  L+CRT
Sbjct: 45  MLAACAAHAGLRIRVVDSGHASHHERGRGD-ALQCRT 80


>UniRef50_Q96C86 Cluster: Scavenger mRNA-decapping enzyme DcpS;
           n=29; Euteleostomi|Rep: Scavenger mRNA-decapping enzyme
           DcpS - Homo sapiens (Human)
          Length = 337

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +1

Query: 496 IRNMSPYETLPILRNNLLHNRVRVQPRLHQQGDSKRIILNFIPT 627
           +R+++P E LP+LRN L   +  +  R   +GD  R+ L+++P+
Sbjct: 230 LRDLTP-EHLPLLRNILHQGQEAILQRYRMKGDHLRVYLHYLPS 272


>UniRef50_P68713 Cluster: Protein A19; n=33; Poxviridae|Rep: Protein
           A19 - Vaccinia virus (strain Ankara) (VACV)
          Length = 77

 Score = 33.1 bits (72), Expect = 8.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 511 ETCFLCSATTKTVVMVTSINKATVSTINRINSDAISCCCC 392
           + C  CSA    +V ++ I K ++  IN +  + ++C  C
Sbjct: 26  DDCMTCSACQSKLVKISDITKVSLDYINTMRGNTLACAAC 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,683,078
Number of Sequences: 1657284
Number of extensions: 14273927
Number of successful extensions: 37355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37230
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72143915536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)