Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0493.Seq
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   3.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   3.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   6.9  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   9.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   9.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.1  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 700 IHKRKRHSMMT*INILFFIHLDYN 771
           + KR RH   T + ++F +HL ++
Sbjct: 121 LEKRNRHIFRTSVLLIFVMHLMFD 144


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 700 IHKRKRHSMMT*INILFFIHLDYN 771
           + KR RH   T + ++F +HL ++
Sbjct: 121 LEKRNRHIFRTSVLLIFVMHLMFD 144


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 HRVELFKDYYNRRKHY*PN 175
           H  E F ++YN+R+ + P+
Sbjct: 865 HAPEGFNEFYNQRRRWVPS 883


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 HRVELFKDYYNRRKHY*PN 175
           H  E F ++YN+R+ + P+
Sbjct: 865 HAPEGFNEFYNQRRRWVPS 883


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 HRVELFKDYYNRRKHY*PN 175
           H  E F ++YN+R+ + P+
Sbjct: 865 HAPEGFNEFYNQRRRWVPS 883


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 119 HRVELFKDYYNRRKHY*PN 175
           H  E F ++YN+R+ + P+
Sbjct: 865 HAPEGFNEFYNQRRRWVPS 883


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 106 NTGSHFRQNTWTPD 65
           + GS F +N W PD
Sbjct: 113 SVGSEFIKNIWVPD 126


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 518 KLYLYFEIIYSTIGFAYSLAFINKETA 598
           K+Y Y  + + T+G A S+ +  K+ A
Sbjct: 32  KIYAYGVVAFITLGVAVSVFYRAKDYA 58


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 518 KLYLYFEIIYSTIGFAYSLAFINKETA 598
           K+Y Y  + + T+G A S+ +  K+ A
Sbjct: 32  KIYAYGVVAFITLGVAVSVFYRAKDYA 58


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 75  GRQMCHEPXSXNXTNNEHVH 16
           G+QM H P      +N++ H
Sbjct: 427 GQQMMHRPPGDPAFHNQYAH 446


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,532
Number of Sequences: 336
Number of extensions: 3962
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)