Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0493.Seq
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    31   0.26 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   1.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   3.3  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    27   4.3  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 208 YTHFSLS*ALSVWSIMFPSIIIIFEQFYSMYQF 110
           Y H +    ++VW+I+ P+  I F   YS YQF
Sbjct: 242 YMHSTWRWGIAVWTILIPACSIPFLAVYSYYQF 274


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 521  LYLYFEIIYSTIGFAYSLAFINKETAS 601
            LY++F++ +ST G A + A  N +TAS
Sbjct: 1342 LYMFFQMYFSTFGQAVASACPNAQTAS 1368


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 493 SATTKTVVMVTSINKATVSTINRINSDAIS 404
           S++T TV++ TS+N   VS+   + S +I+
Sbjct: 194 SSSTNTVILTTSVNSPAVSSSETLTSVSIT 223


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 181 RPTIVRNVYTKVEDK*EKIKESVEIQF*QDVVFVSRYGE 297
           +P+ V+N  +  + K EK  + V +QF  D  F S  GE
Sbjct: 38  KPSTVKNAISSSQIKNEKFSQEVLLQF-NDPSFTSEVGE 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,452
Number of Sequences: 5004
Number of extensions: 63411
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)