Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0493.Seq
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0854 + 25400855-25403741,25406174-25407708                       31   0.85 
10_01_0218 - 2351191-2351319,2351782-2351985                           29   3.4  
04_04_0705 - 27406405-27406424,27406425-27409260                       29   6.0  

>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -2

Query: 462 PRLTKPRCPLSTVSIPMPFPAAVAARSFLLRRCTVIKTTSLLKSGS 325
           P +  P   L  + IPMP PAA AA +  + +   ++T S L SGS
Sbjct: 658 PAVAPPAAALEAILIPMPPPAAAAAAAAPVPKKRKVRTASTL-SGS 702


>10_01_0218 - 2351191-2351319,2351782-2351985
          Length = 110

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 498 YAVRQRRPWSW*PRLTKPRCPLST 427
           Y    R PW W PRL  P  P +T
Sbjct: 13  YGRIHRMPWQWLPRLDPPNAPTAT 36


>04_04_0705 - 27406405-27406424,27406425-27409260
          Length = 951

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 394 CCEEFLITEMYSDKNDVTTKVRIKFVYAKAMRPLRSGKQKQHLV 263
           CC   LI EM   ++   TK R  FV++K    L+S K+ +HLV
Sbjct: 493 CCIHDLIREMIVHRS---TKERF-FVFSKCTVTLKSSKKARHLV 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,326,833
Number of Sequences: 37544
Number of extensions: 380174
Number of successful extensions: 1130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)