Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0493.Seq
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7909| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)                  28   8.1  
SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_7909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +2

Query: 407 NGIGIDTVDSGHRGFVNRGHHDHGLRCRTA*ETCLLMKLYLYFEIIYSTIGFAY--SLAF 580
           + I +D  D    GF N G   H   C     TC +    L +  +Y T+G+ Y  SLA 
Sbjct: 109 HSISLDANDIESPGFKNFGVDSHAEYCVPIIRTCEVTVPELSWNEVYYTLGYYYFVSLAV 168

Query: 581 INKE 592
            N E
Sbjct: 169 NNGE 172


>SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)
          Length = 633

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 507 HVSYAVRQRRPWSW*PRLTKPRCPLSTVSIP 415
           ++S  + ++ P S  P + +  CPLSTVSIP
Sbjct: 602 YLSKKIVKKEPKSKTPSMRQVYCPLSTVSIP 632


>SB_41280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 127 YSMYQFNNTGSHFRQNTWTPDVPR 56
           +S   F  T S   + +WTPD+PR
Sbjct: 334 FSYTSFLTTASRISEESWTPDLPR 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,029,833
Number of Sequences: 59808
Number of extensions: 457698
Number of successful extensions: 1103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)