Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0493.Seq
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64598-7|AAK39218.3|  523|Caenorhabditis elegans Twik family of ...    28   7.1  
AY255664-1|AAQ96601.1|  523|Caenorhabditis elegans two-P domain ...    28   7.1  
AL032627-1|CAB63352.2|  444|Caenorhabditis elegans Hypothetical ...    28   9.4  

>U64598-7|AAK39218.3|  523|Caenorhabditis elegans Twik family of
           potassium channelsprotein 28 protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 209 RKLRINERKSRNQWRSNSNKMLFLFPATERSHRFCIHEFD---PDFSSDVVFITVHLRNK 379
           RKLR   +K  +Q+RS S         + ++    +H+ D    D + D + I V +   
Sbjct: 236 RKLRRQSKKITSQYRSQSQSRSSSVMGSSKAGSMNLHDIDSDSEDSAGDELRIPVFMVLL 295

Query: 380 KLLAATAAG 406
            LLA TA G
Sbjct: 296 VLLAYTAIG 304


>AY255664-1|AAQ96601.1|  523|Caenorhabditis elegans two-P domain K
           channel protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 209 RKLRINERKSRNQWRSNSNKMLFLFPATERSHRFCIHEFD---PDFSSDVVFITVHLRNK 379
           RKLR   +K  +Q+RS S         + ++    +H+ D    D + D + I V +   
Sbjct: 236 RKLRRQSKKITSQYRSQSQSRSSSVMGSSKAGSMNLHDIDSDSEDSAGDELRIPVFMVLL 295

Query: 380 KLLAATAAG 406
            LLA TA G
Sbjct: 296 VLLAYTAIG 304


>AL032627-1|CAB63352.2|  444|Caenorhabditis elegans Hypothetical
           protein Y41C4A.1 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 583 QQGDSKRIILNFIPTDTANLLGNINMEL 666
           +QGD   I L+ I  D A L+G + M+L
Sbjct: 227 KQGDKNYIKLHMIQVDPAKLIGRVTMKL 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,142,509
Number of Sequences: 27780
Number of extensions: 351339
Number of successful extensions: 930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)