Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0493.Seq
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   2.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   2.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 568 QPRLHQQGDSKRIILNFIPTDTANLLGNINMELNSEDGKRRLCKI 702
           +P  + +  S ++     P D+ NLLG +  E    DG   LC++
Sbjct: 28  EPLDNDKEQSAQVCYRGAPQDSENLLGRVLAEF---DGTTVLCRV 69


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +3

Query: 276 FCFPLRRGLIAFAYTNLILTLVVTSFLSLYISVIRNXXXXXXXEMASELIRLIVDTVALL 455
           F   LRR  + F   NLI+  V  SFLS+ +  + +          S L+ L V    LL
Sbjct: 228 FNITLRRKTL-FYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLSISILLSLTV-FFLLL 285

Query: 456 IEVTMTTVFVVALHKKHV 509
            E+   T   V L  K++
Sbjct: 286 AEIIPPTSLTVPLLGKYL 303


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -2

Query: 738 YLSHHAVPLSLVYFTE-----PSLSIFTIELHINITK*ICSVSWNKIKNNSLAVSLL 583
           YL  H +P +++   +         I T  +     K ICS  + KIK  ++ +SL+
Sbjct: 64  YLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQFIKRICSALFGKIKPTAIGLSLI 120


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 106 NTGSHFRQNTWTPD 65
           + GS F +N W PD
Sbjct: 84  SVGSEFIKNIWVPD 97


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 106 NTGSHFRQNTWTPD 65
           + GS F +N W PD
Sbjct: 84  SVGSEFIKNIWVPD 97


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 106 NTGSHFRQNTWTPD 65
           + GS F +N W PD
Sbjct: 23  SVGSEFIKNIWVPD 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,407
Number of Sequences: 438
Number of extensions: 4663
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)