Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0493.Seq
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17830.1 68418.m02090 hypothetical protein contains Pfam doma...    29   3.8  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    28   8.7  

>At5g17830.1 68418.m02090 hypothetical protein contains Pfam domain,
           PF04515: Protein of unknown function, DUF580
          Length = 474

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 359 TVHLRNKKLLAATAAGNGIGIDTVDSGHR-GFVNRGHHDHGLR 484
           T+   N+ + A+T   N I    +  G+R GFV+ G H+ GLR
Sbjct: 299 TIRCCNRDIYASTPGCNWIANHIILGGNRYGFVHVGAHNKGLR 341


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P46100
            Transcriptional regulator ATRX {Homo sapiens}; contains
            PFam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain;
            non-consensus GC donor splice site at exon boundary 28614
          Length = 1457

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -2

Query: 513  RRHVSYAVRQRRPWSW*PRLTKPRCPLSTVSIPMPFPAAVAARSFLLRRCTVI 355
            RR + +   QR P+S  P + KP  P ST + P+P P       F+ R CT I
Sbjct: 1364 RRALEWEEVQRVPFSESPVVPKP-SP-STQTEPLPQPKGFNRSRFVNRNCTRI 1414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,227
Number of Sequences: 28952
Number of extensions: 318820
Number of successful extensions: 799
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)