Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0491.Seq
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.73 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 77   WTTTAS-RTGCSRPVRAGSTGTRAACSGW 160
            WTTT + RT  +RP    ST TR   + W
Sbjct: 1052 WTTTTTRRTTTTRPTTT-STTTRPTTTNW 1079



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +3

Query: 75   CGRQRQVAL----GVRGPSEPGQQEREPPVLDGPDAV 173
            CG  R   L     V   +  GQQE  PP+ + P +V
Sbjct: 1749 CGEGRHPLLTTIRNVLADAGTGQQETIPPIDEEPPSV 1785


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 61  RWWNYVDDNGKSHWVFEARQSRVNRNESR 147
           RW N   +N  +HW         N   SR
Sbjct: 375 RWHNNNGNNSNNHWRKNNPNDNRNNTSSR 403


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 468 NKNCIVFSIFTFPIFISVLHF 530
           +KNC +  IF   +F  +L+F
Sbjct: 39  DKNCTIVIIFHLILFAVLLYF 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,576
Number of Sequences: 336
Number of extensions: 2756
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)