Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0491.Seq
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    78   1e-15
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    31   0.15 
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    30   0.34 
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   3.2  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   7.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.4  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   9.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   9.7  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLC 174
           LL+ D WTVKN+SGRLLVGLRW N    +G+S W+FE+      RN  + + FW  L L 
Sbjct: 85  LLAVDLWTVKNVSGRLLVGLRWRNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLY 144

Query: 175 PLVWSTFFIFCLFGLKFKWM 234
           P +W    I  +   +F W+
Sbjct: 145 PFIWIILGIVAIIRFEFLWL 164


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 228 VDAPSIDRLTLTGANLYGYIKCKFGAKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAG 407
           V++   +RL   G ++    +  F + +S KSA+  F +  I  N   FMF   T  ++ 
Sbjct: 311 VESYLAERLRFIGESIRRSSQQIFSSLQSAKSASVSFSRSYIDWNPEGFMFHSKTKKSSF 370

Query: 408 NTGV 419
           NT +
Sbjct: 371 NTSL 374


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 257 SKAINTRSIHLNLSPKRQNIKKVDQTKGHSVR 162
           SKA   +++ +++ PKRQ +K  + TK H V+
Sbjct: 383 SKAYGNQAVVISVDPKRQYVKVPEDTKHHVVK 414


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 350 DIPKRTCLYVLATHAAQRWQHWCRLNKI 433
           D+P+ TCL  +++H   R Q   RL +I
Sbjct: 625 DLPEATCLIQISSHYGSRRQEAQRLGRI 652


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 105 VRGPSEPGQQEREPPVLDGPDAVPLGLVHFLYILPFRTQVQVDAPSIDRLTLTGAN-LYG 281
           ++  ++P  + R PP++ G    P G + +L    + T V    P++  L LTGA  L  
Sbjct: 438 IKAGNKPAPEARLPPMMIGSFLFPAG-IFWLAWSGYYTYVHWIVPTLSGL-LTGAGILLI 495

Query: 282 YIKC 293
           +++C
Sbjct: 496 FLQC 499


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 254 KAINTRSIHLNLSPKRQNIKKVDQTKGHSVRPIQN 150
           K  N  S+ LN +PK   I  +D       +P+ N
Sbjct: 264 KEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSN 298


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYV 78
           L S   W  KN+ GR+L+   W+N V
Sbjct: 441 LNSLKSWIEKNMGGRILLTGSWYNGV 466


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 198 KESGPDQGAQRQAHPEQAALVPVDPALTGLEH 103
           K+  P        HP+Q  + P DPA+    H
Sbjct: 245 KDQKPKNHEAPHQHPQQKVVPPDDPAIVSHRH 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,250
Number of Sequences: 5004
Number of extensions: 43563
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)