Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0491.Seq
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 82 4e-16
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 81 6e-16
01_06_0409 + 29142409-29142870 31 1.1
12_01_1095 + 11436012-11436053,11436322-11436595,11470730-114707... 29 3.3
11_06_0008 - 19181933-19182009,19185148-19185691 29 4.4
05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425 29 4.4
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 29 4.4
01_03_0201 + 13758227-13758760,13758784-13759452 29 4.4
10_01_0334 - 3680612-3681266,3682253-3682374 28 5.8
01_01_0522 - 3834551-3835451,3835992-3836572 28 5.8
02_03_0253 + 16905723-16907105 28 7.6
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLT 168
L + DFW VKN+SGR+LVGLRWWN +DD G S W FE +R+N+ +S LFW L
Sbjct: 80 LAALDFWVVKNVSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLY 139
Query: 169 LCPLVWSTFFIFCLFGL 219
L W IF L L
Sbjct: 140 LTAAAWIVLGIFSLIRL 156
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 81.4 bits (192), Expect = 6e-16
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Frame = +1
Query: 1 LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLT 168
L + DFW VKN+SGR+LVG+RWWN +DD G S W FE +R+N+ +S LFW L
Sbjct: 86 LAALDFWVVKNVSGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLY 145
Query: 169 LCPLVWSTFFIFCLFGLKFKWM 234
L W IF L L+ ++
Sbjct: 146 LTAAAWIILGIFSLIRLEADYL 167
>01_06_0409 + 29142409-29142870
Length = 153
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 196 RKWTRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSST 65
R+W+RP A G R R C GS G R P+AT H +T
Sbjct: 44 RRWSRPDLDAGGSGRR--RRQCGDGSGGGRGPAATWWLPCHLAT 85
>12_01_1095 +
11436012-11436053,11436322-11436595,11470730-11470762,
11470770-11471494
Length = 357
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 114 PSEPGQQEREPPVLDGPDAVPLGLVHFLYILPFRTQ 221
P EP QQ PP L +VPLG+V+ L + PFR++
Sbjct: 5 PPEPPQQ---PPQL----SVPLGIVNVLSLYPFRSE 33
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 186 PDQGAQRQAHPEQAALVPVDPALTGLEHPV 97
P+ G R +HP+ L+PV L GL PV
Sbjct: 113 PETGGHRVSHPQAPPLLPVLLELGGLRAPV 142
>05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425
Length = 604
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 383 REHKGRCVLEYLLLHELCGR*LEALFGSELTLYVTVEISAC*SKAINT 240
R+ G + ++L +E+C R A FG+ L Y+T ++ +A NT
Sbjct: 18 RKQGGFRTMPFILANEICDRFATAGFGANLITYLTQQLHLPLVEASNT 65
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 78 GRQRQVALGVRGPSEPGQQEREPPVLDG 161
G+QR + LG+ GP G PPVL+G
Sbjct: 245 GQQRMIDLGITGPE--GHALSRPPVLEG 270
>01_03_0201 + 13758227-13758760,13758784-13759452
Length = 400
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 109 EARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLF 213
+A ++ R+ SR +W+ T C W +F F LF
Sbjct: 148 DAGGGKITRSSSRRWWLCPTGCYARWGSFMEFLLF 182
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = -2
Query: 196 RKWTRPRGTASGPS--RTGGSRSC*PGSDGPRTPSATCRC 83
R W PRG SG R GGSR G+ G +A C
Sbjct: 142 RSWRSPRGAGSGRGCYRRGGSREGRRGARGASAAAAVDGC 181
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 187 TRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSS 68
T P S S G S S S G TP+++CR +PH +
Sbjct: 18 TAPDSRRSWISDIGSSSSVSARSFGGDTPASSCRYKPHKA 57
>02_03_0253 + 16905723-16907105
Length = 460
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 GQQEREPPVLDGPDAVPLGLVHFLYILPFRTQVQVDAP-SIDRLTLTGA 269
G EPPV+D V +H L+ P R Q D+P ++DRL T A
Sbjct: 194 GNVPPEPPVMDHSFIVDRKDIHDLFAAP-RAQKGFDSPDAMDRLVATYA 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,078,428
Number of Sequences: 37544
Number of extensions: 296620
Number of successful extensions: 977
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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