Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0491.Seq
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)                83   2e-16
SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)                  31   0.84 
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)                   31   1.1  
SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)                   29   4.5  
SB_19710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_49643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_26735| Best HMM Match : rve (HMM E-Value=0.00066)                   28   7.8  

>SB_21435| Best HMM Match : DUF846 (HMM E-Value=4.3e-35)
          Length = 323

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 32/40 (80%), Positives = 38/40 (95%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ 120
           LLS DFWTVKN+SGRLLVGLRWWNYVD++G SHWVFE+++
Sbjct: 220 LLSCDFWTVKNVSGRLLVGLRWWNYVDEDGNSHWVFESKK 259


>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
          Length = 696

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 296 VRSQREPQVSDHRVHEAADIPKRTCLYVLATHAAQRWQHW-CRLNKINEDAYL 451
           +RS+ E + +D    E  D+    C  +LA+   Q  QHW    NKI    YL
Sbjct: 593 IRSEGEEKFADMTEFETVDLQNCKCAEILASIFPQLVQHWRAANNKIKTMRYL 645


>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
          Length = 338

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 148 GGSRSC*PGSDGPRTPSATCRCRPHS 71
           GG     PG  G RTP   CRC  HS
Sbjct: 313 GGGGGGSPGLSGRRTPRGRCRCTQHS 338


>SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)
          Length = 533

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 200 IKKVDQTKGHSVRPIQNXXXXXXXXXXXRASNTQCDLPLSST*FHHLSPTSNRPLIFLTV 21
           +KK++ +K H+   IQN             +  + D+P+S       SP SN   IF   
Sbjct: 458 LKKLEFSKEHTDYDIQNIHRLRIYRLRSLDTEIKADVPVSRLFLRFFSPVSNIAEIFFVN 517

Query: 20  QKS 12
           +K+
Sbjct: 518 RKA 520


>SB_19710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 258 LTGANLYGYIKCKFGAKESLKSATTEFMKQQIFQNAPAFMFSQPTPP 398
           L   N+ G +K K   K  L   TT +++ QIF+ +   +F  P PP
Sbjct: 91  LPSRNVIGSVKGK-DFKRLLLKRTTRYLRGQIFRFSAKRVFIPPPPP 136


>SB_49643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 109 EARQSRVNRNESRLFWMGLTLCP---LVWSTFFIFCLFGLKF 225
           E  Q   +R   ++ WM + +     + W+ FF+ C   +KF
Sbjct: 207 EQAQRNAHRTAKKVTWMVVAIMSVFEICWTPFFVMCFINVKF 248


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 181 PRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPH 74
           PRG A  PS   G  S   G+ GP +  +  R  PH
Sbjct: 698 PRGRAESPSNAHGRASSPSGTRGPVSGPSGARGSPH 733


>SB_26735| Best HMM Match : rve (HMM E-Value=0.00066)
          Length = 333

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = +3

Query: 258 LTGANLYGYIKCKFGAKESLKS-------ATTEFMKQQIFQNAPAFMFSQ 386
           +TG +L+G  + K+G K+S+K+       AT   +  +I +N  A  F Q
Sbjct: 18  VTGVDLFGPFRLKYGRKQSIKAWEAIFTCATVRAVHLEIVENTSAEAFLQ 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,517,443
Number of Sequences: 59808
Number of extensions: 336501
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)