Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0491.Seq
         (662 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    29   0.13 
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    29   0.13 
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    28   0.23 
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    28   0.23 
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    25   2.8  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   3.7  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    23   6.5  

>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 193 KWTRPRGTASGPSRT---GGSRSC*PGSDGPRTPSATCRCRPH 74
           +WT     +   SRT   G + SC   S  PRTP    RCR H
Sbjct: 6   RWTEAMSDSGYDSRTDGNGAASSC-NNSLNPRTPPNCARCRNH 47


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 193 KWTRPRGTASGPSRT---GGSRSC*PGSDGPRTPSATCRCRPH 74
           +WT     +   SRT   G + SC   S  PRTP    RCR H
Sbjct: 6   RWTEAMSDSGYDSRTDGNGAASSC-NNSLNPRTPPNCARCRNH 47


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 0.23
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -2

Query: 193 KWTRPRGTASGPSRT---GGSRSC*PGSDGPRTPSATCRCRPH 74
           +W      +   SRT   G S SC   S  PRTP    RCR H
Sbjct: 6   RWAEAMSDSGYDSRTDGNGASSSC-NNSLNPRTPPNCARCRNH 47


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 0.23
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -2

Query: 193 KWTRPRGTASGPSRT---GGSRSC*PGSDGPRTPSATCRCRPH 74
           +W      +   SRT   G S SC   S  PRTP    RCR H
Sbjct: 6   RWAEAMSDSGYDSRTDGNGASSSC-NNSLNPRTPPNCARCRNH 47


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 54  WTEVVELCGRQRQVALGVRGPSEPGQQERE---PPVL 155
           WT VV  C  QRQ  L  +   +  QQ+ E   PP L
Sbjct: 420 WTTVVRSCPSQRQRQLQQQQQQQQQQQQGERYVPPQL 456


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 169  LCPLVWSTFFIFCLFGLKF 225
            +C L++   FIF +FG+ F
Sbjct: 1755 ICLLLFLVMFIFAIFGMSF 1773


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 142 SRSC*PGSDGPRTPSATCRCRPHSSTTSVQ 53
           S+SC   S+GP T +       ++STTS Q
Sbjct: 123 SQSCKYASEGPSTGTNVINNNNNNSTTSPQ 152


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,594
Number of Sequences: 2352
Number of extensions: 11586
Number of successful extensions: 27
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)