Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0491.Seq
         (662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008430-1|AAH08430.1|  205|Homo sapiens family with sequence si...   112   9e-25
AF223467-1|AAF64142.1|  205|Homo sapiens NPD008 protein protein.      112   9e-25
AF151906-1|AAD34143.1|  181|Homo sapiens CGI-148 protein protein.     112   9e-25
BC011952-1|AAH11952.1|  276|Homo sapiens family with sequence si...   108   2e-23
AB074181-1|BAE45741.1|  164|Homo sapiens putative protein produc...   106   6e-23
BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processi...    31   2.8  
BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.      31   2.8  

>BC008430-1|AAH08430.1|  205|Homo sapiens family with sequence
           similarity 18, member B protein.
          Length = 205

 Score =  112 bits (270), Expect = 9e-25
 Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 162
           LLS DFW VKN++GRL+VGLRWWN++D++GKSHWVFE+R+     N      ESR+FW+G
Sbjct: 71  LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLG 130

Query: 163 LTLCPLVWSTFFIFCLFGLKFKWM 234
           L  CP++W  F    LF  + KW+
Sbjct: 131 LIACPVLWVIFAFSALFSFRVKWL 154



 Score = 43.2 bits (97), Expect = 9e-04
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +3

Query: 168 AVPLGLVHFLYILPFRTQVQVDAPSIDRLTLTGANLYGYIKCKFGAKESLKS-ATTEFMK 344
           A P+  V F +   F  +V+  A  I  + L GANLYGYI+CK  +++ L S AT+ F K
Sbjct: 133 ACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGK 192

Query: 345 QQIFQN 362
           Q + QN
Sbjct: 193 QFLRQN 198


>AF223467-1|AAF64142.1|  205|Homo sapiens NPD008 protein protein.
          Length = 205

 Score =  112 bits (270), Expect = 9e-25
 Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 162
           LLS DFW VKN++GRL+VGLRWWN++D++GKSHWVFE+R+     N      ESR+FW+G
Sbjct: 71  LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLG 130

Query: 163 LTLCPLVWSTFFIFCLFGLKFKWM 234
           L  CP++W  F    LF  + KW+
Sbjct: 131 LIACPVLWVIFAFSALFSFRVKWL 154



 Score = 43.2 bits (97), Expect = 9e-04
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +3

Query: 168 AVPLGLVHFLYILPFRTQVQVDAPSIDRLTLTGANLYGYIKCKFGAKESLKS-ATTEFMK 344
           A P+  V F +   F  +V+  A  I  + L GANLYGYI+CK  +++ L S AT+ F K
Sbjct: 133 ACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGK 192

Query: 345 QQIFQN 362
           Q + QN
Sbjct: 193 QFLRQN 198


>AF151906-1|AAD34143.1|  181|Homo sapiens CGI-148 protein protein.
          Length = 181

 Score =  112 bits (270), Expect = 9e-25
 Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 6/84 (7%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 162
           LLS DFW VKN++GRL+VGLRWWN++D++GKSHWVFE+R+     N      ESR+FW+G
Sbjct: 71  LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLG 130

Query: 163 LTLCPLVWSTFFIFCLFGLKFKWM 234
           L  CP++W  F    LF  + KW+
Sbjct: 131 LIACPVLWVIFAFSALFSFRVKWL 154



 Score = 33.9 bits (74), Expect = 0.52
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +3

Query: 168 AVPLGLVHFLYILPFRTQVQVDAPSIDRLTLTGANLYGYIKCKFGAK 308
           A P+  V F +   F  +V+  A  I  + L GANLYGYI+CK   K
Sbjct: 133 ACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRKK 179


>BC011952-1|AAH11952.1|  276|Homo sapiens family with sequence
           similarity 18, member B2 protein.
          Length = 276

 Score =  108 bits (259), Expect = 2e-23
 Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 6/84 (7%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 162
           LLS DFW VKN++GRL+VGLRWWN++D++GKSHWVFE+R+     N      ESR+FW+G
Sbjct: 71  LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLG 130

Query: 163 LTLCPLVWSTFFIFCLFGLKFKWM 234
           L  C ++W  F    LF    KW+
Sbjct: 131 LIACSVLWVIFAFSALFSFTVKWL 154


>AB074181-1|BAE45741.1|  164|Homo sapiens putative protein product
           of Nbla10383 protein.
          Length = 164

 Score =  106 bits (255), Expect = 6e-23
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMG 162
           LLS DFW VKN++GRL+VGLRWWN++D++GK HWVFE+R+     N      ESR+FW+G
Sbjct: 71  LLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKGHWVFESRKESSQENKTVSEAESRIFWLG 130

Query: 163 LTLCPLVWSTFFIFCLFGLKFKWM 234
           L  C ++W  F    LF    KW+
Sbjct: 131 LIACSVLWVIFAFSALFSFTVKWL 154


>BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processing
           factor 40 homolog B (S. cerevisiae) protein.
          Length = 871

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 69  ELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 188
           E  G+Q+Q       P  P  Q   PPV  GP  VP GL+
Sbjct: 177 EAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216


>BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.
          Length = 788

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 69  ELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 188
           E  G+Q+Q       P  P  Q   PPV  GP  VP GL+
Sbjct: 177 EAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,360,931
Number of Sequences: 237096
Number of extensions: 1693800
Number of successful extensions: 5109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5104
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)