Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0491.Seq
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...   101   5e-22
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...   101   5e-22
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   9.0  

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score =  101 bits (242), Expect = 5e-22
 Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLC 174
           LLS DFWTVKNI+GRLLVGLRWWN+VD +G +HW FE+ +  +R    + R+FW+GL + 
Sbjct: 68  LLSMDFWTVKNITGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVG 127

Query: 175 PLVWSTFFIFCLFGLKFKWM 234
           P  W  F +     LKF+WM
Sbjct: 128 PAAWIFFVVTAFLTLKFEWM 147


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score =  101 bits (242), Expect = 5e-22
 Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLC 174
           LLS DFWTVKNI+GRLLVGLRWWN+VD +G +HW FE+ +  +R    + R+FW+GL + 
Sbjct: 110 LLSMDFWTVKNITGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVG 169

Query: 175 PLVWSTFFIFCLFGLKFKWM 234
           P  W  F +     LKF+WM
Sbjct: 170 PAAWIFFVVTAFLTLKFEWM 189


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 3    AVCRLLDCQEY*WSVTSWTEVVELCGRQRQVALGVRGPSEPGQQ 134
            A C  + C  Y W+VT W++  + C R ++    V   S  G++
Sbjct: 1743 ANCFPVACPAYRWNVTPWSKCKDECARGQKQTRRVHCISTSGKR 1786


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 3    AVCRLLDCQEY*WSVTSWTEVVELCGRQRQVALGVRGPSEPGQQ 134
            A C  + C  Y W+VT W++  + C R ++    V   S  G++
Sbjct: 1743 ANCFPVACPAYRWNVTPWSKCKDECARGQKQTRRVHCISTSGKR 1786


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,495
Number of Sequences: 27780
Number of extensions: 253362
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)