Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0491.Seq
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09330.1 68414.m01044 expressed protein contains 3 transmembr...    78   5e-15
At4g21250.1 68417.m03072 expressed protein   contains Pfam profi...    29   3.6  
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote...    28   4.8  
At1g07010.1 68414.m00746 calcineurin-like phosphoesterase family...    28   4.8  
At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr...    28   6.4  
At5g42350.1 68418.m05157 kelch repeat-containing F-box family pr...    28   6.4  
At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almo...    27   8.4  
At2g07215.1 68415.m00828 hypothetical protein                          27   8.4  

>At1g09330.1 68414.m01044 expressed protein contains 3 transmembrane
           domains; contains Pfam profile PF05832: Eukaryotic
           protein of unknown function
          Length = 186

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
 Frame = +1

Query: 1   LLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLT 168
           L + DFW VKN+SGR+LVGLRWWN ++D G+S W FE+      +R+N+ +S LFW  L 
Sbjct: 54  LAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLY 113

Query: 169 LCPLVWSTFFIFCL 210
           L    W    +F L
Sbjct: 114 LAAAAWFILGVFSL 127


>At4g21250.1 68417.m03072 expressed protein   contains Pfam profile:
           PF01925 domain of unknown function DUF81
          Length = 449

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +1

Query: 118 QSRVNRNESRLFWMGLTLCPLVWSTFFIFCL 210
           +++  +N+S++ W  L +  +VW++FF+  L
Sbjct: 214 EAQATKNKSKIPWTKLGVLVIVWASFFVIYL 244


>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GI:4105699
           from [Arabidopsis thaliana]
          Length = 996

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 219 QVQVDAPSIDRLTLTGANLYGYIKCKFGAKESLK 320
           Q   D P++  L LTG N  G I   FG  E+L+
Sbjct: 126 QTLADIPTLVHLDLTGNNFSGDIPASFGKFENLE 159


>At1g07010.1 68414.m00746 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 389

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 82  DNGKSHWVFEARQSRVNRNESRLFW 156
           D    +W+FE+RQ + +R  S+ +W
Sbjct: 173 DKAFRNWIFESRQWKEDRRSSQTYW 197


>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 43  RLLVGLRWWNYVDDNG-KSHWVFEARQSRVNRNESRLF 153
           RL V  +  N  D NG KSH +   +  R+NRN S+ F
Sbjct: 317 RLSVRRQNRNSADQNGTKSHRLIRQKLDRLNRNSSKRF 354


>At5g42350.1 68418.m05157 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 563

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 43  RLLVGLRWWNYVDDNG-KSHWVFEARQSRVNRNESRLF 153
           RL V  +  N  D NG KSH +   +  R+NRN S+ F
Sbjct: 317 RLSVRRQNRNSADQNGTKSHRLIRQKLDRLNRNSSKRF 354


>At3g27925.1 68416.m03484 DegP protease, putative SP:022609; almost
           identical to DegP protease precursor GB:AF028842 from
           [Arabidopsis thaliana] (J. Biol. Chem. 273 (12),
           7094-7098 (1998))
          Length = 439

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 113 ASNTQCDLPLSST*FHHLSPTSNRPLIFLTVQKSA 9
           A+ T C L LSST F H  P+S+     L+  +S+
Sbjct: 2   ATTTSCSLLLSSTLFLHSPPSSHLSFFNLSSSRSS 36


>At2g07215.1 68415.m00828 hypothetical protein
          Length = 245

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 350 DIPKRTCLYVLATHAAQRWQHWCRLNKINEDAYLGMIFK 466
           D P + C + L T   +R  HW RL K+ ++  LG+I K
Sbjct: 103 DSPFKWCPWPLKTE--KRRLHWDRLCKLQKETNLGLIGK 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,032,770
Number of Sequences: 28952
Number of extensions: 230588
Number of successful extensions: 598
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)