Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0490.Seq
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0530 - 4191185-4191290,4191386-4191429,4192165-4192296,419...    35   0.076
08_02_0788 + 21201533-21201808,21201923-21202012,21202501-212025...    35   0.10 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.2  
09_04_0104 + 14626756-14626828,14627658-14627791,14628544-146285...    29   5.0  
01_03_0138 + 12963464-12965059,12965085-12965660                       29   6.6  

>12_01_0530 -
           4191185-4191290,4191386-4191429,4192165-4192296,
           4192541-4192630
          Length = 123

 Score = 35.1 bits (77), Expect = 0.076
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 96  SKDPCKRFACEIQRCLVENGYQEVRCDKVFEVMRQC 203
           SK+PCK+ AC+IQ CL +N +   +    F V   C
Sbjct: 5   SKEPCKKEACDIQACLSKNMFDSKKYVYGFLVFTSC 40


>08_02_0788 +
           21201533-21201808,21201923-21202012,21202501-21202588,
           21202811-21202944,21203086-21203135,21203248-21203340,
           21203469-21203560,21203762-21203868,21204194-21204229
          Length = 321

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 764 LTKI*RXF*QIITAYNLPSPFKLRNCWERPIGAGXF-AITQLAKGGCAARRLSWVTP 597
           +T   R F   I  Y+L  PFKL N W    G G F AI  +A  G A   L   TP
Sbjct: 137 ITNTYRPFSNDIFRYDLKEPFKLENGWLLWAGIGFFAAIISIALAGAAMSFLGGETP 193


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 548 ITIHWPSFYNVV-TGKTLALPNLIALQH 628
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>09_04_0104 +
           14626756-14626828,14627658-14627791,14628544-14628593,
           14628684-14628776,14628897-14628988,14629279-14629385,
           14631536-14631712,14631808-14632476
          Length = 464

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 722 YNLPSPFKLRNCWERPIGAGXF-AITQLAKGGCAARRLSWVTP 597
           +N+  PFKL+N W    G G F AI  +A  G A   L+   P
Sbjct: 24  WNIKEPFKLQNGWLLWAGVGLFGAIISIALVGVAMTYLNGEPP 66


>01_03_0138 + 12963464-12965059,12965085-12965660
          Length = 723

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 477 LGEVDRIARPYEDIVDRLREEYSEGKG 397
           LG+ D++ R    IV RL EE++EG+G
Sbjct: 628 LGDRDKVLRDGVAIVGRLVEEFAEGEG 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,968,849
Number of Sequences: 37544
Number of extensions: 506293
Number of successful extensions: 1147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)