Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0490.Seq
         (898 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r...    29   5.5  
At5g62270.1 68418.m07818 expressed protein                             28   7.3  
At1g29730.1 68414.m03634 leucine-rich repeat transmembrane prote...    28   7.3  
At1g27020.1 68414.m03294 expressed protein                             28   7.3  
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    28   9.7  
At3g30320.1 68416.m03828 hypothetical protein                          28   9.7  
At3g16880.1 68416.m02158 F-box protein-related contains weak hit...    28   9.7  

>At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH)
           protein-related identical to cDNA bHLH transcription
           factor (bHLH gamma gene) GI:32562999; weak similarity to
           bHLH transcription activator anthocyanin 1 [Petunia x
           hybrida] GI:10998404
          Length = 720

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 719 NLPSPFKLRNCWERPIGAGXFAITQLAKGGCAARRL 612
           N  S F+  N WE  I AG   I  +A G C   +L
Sbjct: 94  NCNSAFEFHNVWESQISAGIKTILVVAVGPCGVVQL 129


>At5g62270.1 68418.m07818 expressed protein
          Length = 383

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 501 FIKESRRGLGEVDRIARPYEDIVDRLREEYSE 406
           F+KE      E  ++ RP +D VDRL +EY E
Sbjct: 221 FLKEDEEE--EERKLGRPLDDSVDRLLDEYPE 250


>At1g29730.1 68414.m03634 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam domains, PF00560: Leucine
           Rich Repeat and PF00069: Protein kinase domain
          Length = 940

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 87  LFMSKDPCKRFACEIQRCLVENGYQE-VRCDKVFEVMRQCCIKH 215
           L +S+DPC      I + +++ G    +RCD  F     C IKH
Sbjct: 59  LNLSEDPCLTKTLVISQGVLKEGQNSTIRCDCHFNNYSTCHIKH 102


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 586 WENPGVTQLNRLAAHPPFASWVI 654
           WE P  T  N+LA    FA+W +
Sbjct: 163 WEKPTSTDFNQLAKESEFAAWTL 185


>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 69  RKHLIFLFMSKDPCKRFACEIQRCLVENGYQEVRCDKV--FEVMRQCCIKHKPRSLVCEG 242
           R H   +F S  P  +++C + R  V+N Y    C+K   + V  +C +    R  V  G
Sbjct: 258 RHHHRIIFTSSLPSAKWSCGVCRGEVDNHYGAYSCNKCGDYFVHTRCAL----RKDVWNG 313

Query: 243 YDLE 254
            DLE
Sbjct: 314 EDLE 317


>At3g30320.1 68416.m03828 hypothetical protein
          Length = 695

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 580 DVVKRRPVNCNTTHYRANWVPGPPRVFYKGK 488
           DVV R P+NC   +    +V G  +  Y+GK
Sbjct: 411 DVVLRNPINCCEDYLFEKYVTGVLQTVYQGK 441


>At3g16880.1 68416.m02158 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain; contains weak hit to TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 365

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = -1

Query: 229 NDLGLCLIQHCR----ITSNTLSQR-TSW*PFSTRHLWIS----HANLLQGSFDINKKIK 77
           N +G+C + HC     IT +  + R   W P+  +  WI     HA +    ++  K  +
Sbjct: 92  NPIGMCRVYHCGGLVCITKSFSNTRDVVWNPYLGQTRWIKPRSHHAYIYAIGYETKKSCR 151

Query: 76  CFR-TKSTHNFRN 41
            ++   S HN+ N
Sbjct: 152 SYKILSSEHNYIN 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,485
Number of Sequences: 28952
Number of extensions: 396438
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)