Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0487.Seq
         (923 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...   123   7e-27
UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    89   1e-16
UniRef50_P62593 Cluster: Beta-lactamase TEM precursor; n=261; ro...    66   9e-10
UniRef50_Q1UYY9 Cluster: Putative uncharacterized protein; n=1; ...    40   0.068
UniRef50_Q4QE68 Cluster: Putative uncharacterized protein; n=4; ...    36   1.1  

>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score =  123 bits (296), Expect = 7e-27
 Identities = 57/73 (78%), Positives = 60/73 (82%)
 Frame = +2

Query: 476 GEMCAEPLFVYFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILPSCF 655
           G+    P    FLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILPSCF
Sbjct: 28  GKCARNPYLFIFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFCGILPSCF 87

Query: 656 CSPIKRWVKVKRC 694
           CSP +   + KRC
Sbjct: 88  CSP-RNAGESKRC 99



 Score = 43.6 bits (98), Expect = 0.007
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +3

Query: 465 WHFSGKCARNPYLFIF 512
           WHFSGKCARNPYLFIF
Sbjct: 24  WHFSGKCARNPYLFIF 39


>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 89.0 bits (211), Expect = 1e-16
 Identities = 47/71 (66%), Positives = 47/71 (66%)
 Frame = -1

Query: 461 DAPCSGALSAAGVVVTRSVXXXXXXXXXXXXXXXXXXXXXXXAGFPRQALNRGLPLGFRF 282
           DAPCSGALSAAGVVVTRSV                       AGFPRQALNRGLPLGFRF
Sbjct: 2   DAPCSGALSAAGVVVTRSVTATLASALAPAPFAFFPSFLATFAGFPRQALNRGLPLGFRF 61

Query: 281 SALRHLDPKNL 249
           SALRHLDPK L
Sbjct: 62  SALRHLDPKKL 72


>UniRef50_P62593 Cluster: Beta-lactamase TEM precursor; n=261;
           root|Rep: Beta-lactamase TEM precursor - Escherichia
           coli
          Length = 286

 Score = 66.5 bits (155), Expect = 9e-10
 Identities = 37/55 (67%), Positives = 40/55 (72%)
 Frame = +3

Query: 591 MSIQHFRVALIPFFAAFCLPVFAHPLNAG*KLKDAEDSVWVHEXGYIRTWIFNSG 755
           MSIQHFRVALIPFFAAFCLPVFAHP     K+KDAED +     GYI   + NSG
Sbjct: 1   MSIQHFRVALIPFFAAFCLPVFAHPETLV-KVKDAEDQLGA-RVGYIELDL-NSG 52


>UniRef50_Q1UYY9 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Pelagibacter ubique HTCC1002|Rep: Putative
           uncharacterized protein - Candidatus Pelagibacter ubique
           HTCC1002
          Length = 26

 Score = 40.3 bits (90), Expect = 0.068
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -3

Query: 702 NLQHLLTFTQRLMGEQKQEGKMPQKRE 622
           +LQHLL  +   +GEQKQEGKMPQKRE
Sbjct: 1   DLQHLL-LSPAFLGEQKQEGKMPQKRE 26


>UniRef50_Q4QE68 Cluster: Putative uncharacterized protein; n=4;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania major
          Length = 1422

 Score = 36.3 bits (80), Expect = 1.1
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
 Frame = +2

Query: 506  YFLNTFKYVSAHETITLINASIIL---KKEEYEYSTFPCRPYSLFCGILPSCFCS---PI 667
            Y   +F++V+A   +TL++  I++    K    ++ FP  P+ +   + P    +   P+
Sbjct: 1260 YLFRSFRWVAASVLVTLLSIIIVVLDTPKAALHHAFFPSVPHFIVSLLFPVLILALDWPV 1319

Query: 668  KRW-----VKVKRC*RFSLGARVGLHS 733
            KRW       +++  + S G R+G+HS
Sbjct: 1320 KRWRERRFTNMQKFRKLSYGTRLGMHS 1346


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,968,691
Number of Sequences: 1657284
Number of extensions: 14310743
Number of successful extensions: 31508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31497
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)