Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0487.Seq
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    29   0.70 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   8.6  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   8.6  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   8.6  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   8.6  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   8.6  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 248 SSFWGRGAVKH*IGTLKGAPDL 313
           + +WGR   +H +G L+G P+L
Sbjct: 225 TDYWGRAIARHFVGQLRGGPNL 246


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 245 RVMVHVVGHRPDRRFFAL*RWSPRSLIVDSCSK 147
           + +V +    PD +FF +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 663 GEQKQEGKMPQKRE*GRHGNVEYSYSSFFNIIEAFIRVIVS*AD 532
           G+ K+  K    +E   +G  +YSYS+  N++    R  VS  D
Sbjct: 8   GDSKEPPKHGNSKEKPNYGQSQYSYSAMSNLVTQADRRFVSRRD 51


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 51  VKSAHFLTNRPKSAXSLINQKNRP 122
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 500 FVYFLNTFKYVSAHETITLINASIILKKEEYEYSTF 607
           F+Y L  F    +  T  +I ++I+ K+ + E+STF
Sbjct: 117 FLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF 152


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 500 FVYFLNTFKYVSAHETITLINASIILKKEEYEYSTF 607
           F+Y L  F    +  T  +I ++I+ K+ + E+STF
Sbjct: 117 FLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF 152


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 182 SPRSLIVDSCSKLEQHSTLSRSILLI 105
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 500 FVYFLNTFKYVSAHETITLINASIILKKEEYEYSTF 607
           F+Y L  F    +  T  +I ++I+ K+ + E+STF
Sbjct: 117 FLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF 152


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 500 FVYFLNTFKYVSAHETITLINASIILKKEEYEYSTF 607
           F+Y L  F    +  T  +I ++I+ K+ + E+STF
Sbjct: 117 FLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,301
Number of Sequences: 5004
Number of extensions: 60684
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)