Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0487.Seq
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division c...    30   2.7  
AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosph...    30   2.7  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical pr...    29   6.2  

>U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division cycle
            related protein14, isoform b protein.
          Length = 1063

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 431  PRLMRRYRARQVALFGEMCAEPLFVYFLNTFKYVSAHETITLINASIILKKEEYEYS-TF 607
            PR + +       L G+   E   ++  + + +V  H     +   II K+E+  +  T 
Sbjct: 836  PRKVSQVEKFASHLMGKQFEEDKLIH--SAYMFVLNHPEAGAVTGPII-KEEDIPFEETV 892

Query: 608  PCRPYSLFCGILPSCFCSPIKRWVKVKRC 694
             C   +   GILP CF  P K+ ++   C
Sbjct: 893  ECSSTTAVNGILPKCFRQPRKQKLEEDSC 921


>AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosphatase
            isoform B protein.
          Length = 1063

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 431  PRLMRRYRARQVALFGEMCAEPLFVYFLNTFKYVSAHETITLINASIILKKEEYEYS-TF 607
            PR + +       L G+   E   ++  + + +V  H     +   II K+E+  +  T 
Sbjct: 836  PRKVSQVEKFASHLMGKQFEEDKLIH--SAYMFVLNHPEAGAVTGPII-KEEDIPFEETV 892

Query: 608  PCRPYSLFCGILPSCFCSPIKRWVKVKRC 694
             C   +   GILP CF  P K+ ++   C
Sbjct: 893  ECSSTTAVNGILPKCFRQPRKQKLEEDSC 921


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 406  TLRVTTTPAALNAPLQGASGGT--FRGNVRGTPICLFSKYIQI 528
            TL  TTTP  L+AP+      T  F GN+   P+ +FS+Y+++
Sbjct: 983  TLPPTTTPYNLSAPIPKLDCNTIQFYGNLLWRPV-VFSRYMEV 1024


>Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical
           protein T03E6.6 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 383 GRWQV*RSRCA*PPHPPRLMRRYRARQVALFGEMCAEPLFVYFLNTFKYVSA 538
           G W V R RC  PP    L    R  +  +F EM ++ +F Y   +   + A
Sbjct: 201 GLW-VPRKRCNYPPGYTELQYAIRVGRKIIFTEMMSQTIFAYLNGSLNIIPA 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,577,757
Number of Sequences: 27780
Number of extensions: 345662
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)