Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0487.Seq
         (923 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   2.5  
At3g28880.1 68416.m03605 ankyrin repeat family protein contains ...    28   7.6  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 118 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 219
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At3g28880.1 68416.m03605 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 762

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 503 VYFLNTFKYVSAHETITLINASIILKKEEYEYSTFPCRPYSLFC 634
           V+FL  F +  ++ET           K    ++ FPCR + L+C
Sbjct: 651 VFFLREFDFYQSYETCLKEGMCFWCNKNMIRWANFPCR-HKLWC 693


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,515,781
Number of Sequences: 28952
Number of extensions: 319846
Number of successful extensions: 744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)