Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0484.Seq
         (961 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7CRS6 Cluster: Putative uncharacterized protein; n=1; ...    39   0.22 
UniRef50_P47651 Cluster: Phosphate transport system permease pro...    34   4.7  
UniRef50_A3VSB0 Cluster: Putative uncharacterized protein; n=1; ...    34   6.2  

>UniRef50_A7CRS6 Cluster: Putative uncharacterized protein; n=1;
           Opitutaceae bacterium TAV2|Rep: Putative uncharacterized
           protein - Opitutaceae bacterium TAV2
          Length = 435

 Score = 38.7 bits (86), Expect = 0.22
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 586 PTIDFNIEKLXLHIHTSLNYNLIFENTQHDIFNIAIEMVTR 464
           P + FN+ +   HIHT+  Y +IFEN  H +    +  VTR
Sbjct: 316 PWLFFNLSRAIEHIHTARRYEVIFENGVHSVIADGVHTVTR 356


>UniRef50_P47651 Cluster: Phosphate transport system permease
           protein pstA homolog; n=6; Mycoplasma|Rep: Phosphate
           transport system permease protein pstA homolog -
           Mycoplasma genitalium
          Length = 654

 Score = 34.3 bits (75), Expect = 4.7
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = -2

Query: 621 RIYGTRYRLRINLQSILILKNXDSTFIRHLIIILSSKILNTIFLISRLKW 472
           RIYG  + +  N  S+++  +  S     L+I  SS ++ ++FL+++ KW
Sbjct: 589 RIYGQLFSINSNAISVMLETSLVSVVFLILLIFFSSYLIPSLFLLNKQKW 638


>UniRef50_A3VSB0 Cluster: Putative uncharacterized protein; n=1;
           Parvularcula bermudensis HTCC2503|Rep: Putative
           uncharacterized protein - Parvularcula bermudensis
           HTCC2503
          Length = 148

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -3

Query: 845 IWRPWIFXYPEVNPPFTXGRSNRGPXGGYGIFLXKKWVPRLEDSEPPVPPFNHGLYRDVL 666
           +WR  +   P+  PP+  G +  G  G  G     +W+ R    + P PP    L+R  L
Sbjct: 41  VWREVVGEEPQALPPYAPGWARGGDAGALG-EAAARWLERETGPQDPPPPGRVLLFR--L 97

Query: 665 IRLGP 651
            R GP
Sbjct: 98  ARQGP 102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 824,799,087
Number of Sequences: 1657284
Number of extensions: 16679259
Number of successful extensions: 38151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38130
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88998789286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)