Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0484.Seq
         (961 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1542 - 38132731-38133297,38134962-38135168,38135451-38135684     29   5.5  
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189...    29   7.3  
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548...    29   7.3  
01_06_1543 - 38138253-38138855,38139000-38139239                       29   7.3  

>01_06_1542 - 38132731-38133297,38134962-38135168,38135451-38135684
          Length = 335

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 20/64 (31%), Positives = 24/64 (37%)
 Frame = -3

Query: 842 WRPWIFXYPEVNPPFTXGRSNRGPXGGYGIFLXKKWVPRLEDSEPPVPPFNHGLYRDVLI 663
           W P +F YPE N P        G  G Y   L +   P  +D    V     G     L 
Sbjct: 187 WVPLMFMYPEANVPVCQLSLQSGRDGAYHYELGRALAPLRDDG---VLVLGSGSATHNLR 243

Query: 662 RLGP 651
           R+GP
Sbjct: 244 RMGP 247


>08_02_0632 +
           19515234-19515374,19515489-19515656,19518907-19518993,
           19519551-19519685,19519778-19519882,19519968-19520059,
           19520147-19520252,19520320-19520424,19520516-19520929
          Length = 450

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 547 IHTSLNYNLIFENTQHDIFNIAIEMVTRWET 455
           +H  L  NL++  T+HD++ +  + VT W +
Sbjct: 129 VHFQLR-NLVWATTKHDVYTVHNQSVTHWSS 158


>03_02_0079 +
           5485090-5485238,5486066-5486137,5486764-5486840,
           5486946-5486989,5487583-5487639,5487640-5487686,
           5488010-5488184,5489501-5489662,5489845-5489883
          Length = 273

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 797 TXGRSNRGPXGGYGIFLXKKW 735
           T G+SN GP GGY  F    W
Sbjct: 56  TKGKSNYGPGGGYHHFAGSSW 76


>01_06_1543 - 38138253-38138855,38139000-38139239
          Length = 280

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 842 WRPWIFXYPEVNPPFTXGRSNRGPXGGYGIFLXKKWVPRLED 717
           W P +F YPE N P        G  G Y   L +   P  +D
Sbjct: 120 WVPLMFMYPEANVPVCQLSLQTGRDGAYHYDLGRALAPLRDD 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,007,918
Number of Sequences: 37544
Number of extensions: 416438
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)