Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0484.Seq
         (961 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_23952| Best HMM Match : THUMP (HMM E-Value=2.4e-09)                 29   7.4  
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)                   28   9.8  

>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
 Frame = +3

Query: 714 RILQAGYP-FFXKENTVPTXWSXVGPSPGEGRINLRVXKNPRPPNFKLAEIXGXXGPLVE 890
           ++ Q  +P     +N V T W    P P  G +       PR P   L  +     P   
Sbjct: 141 QVYQPNHPQHIPPQNPVATHWQQQQPLPVPGAVGSPYIHQPRHPQHVL--VRSQSLPEEP 198

Query: 891 XPXGWGPPP 917
            P G GPPP
Sbjct: 199 VPPGRGPPP 207


>SB_23952| Best HMM Match : THUMP (HMM E-Value=2.4e-09)
          Length = 229

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 440 QLCFFCLP---TCYHFNRDIKNIVLSIFEDKIIIK 535
           +LC   LP   TC+    DIK   LS+FED  +++
Sbjct: 139 RLCLRFLPVDATCHAKEEDIKKTALSLFEDYFLVE 173


>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
          Length = 1065

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 696 VQPRIVPGRPYPPW 655
           V PR +PGRP PPW
Sbjct: 810 VCPRQIPGRPDPPW 823


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,845,098
Number of Sequences: 59808
Number of extensions: 486518
Number of successful extensions: 977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2824376637
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)