Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0483.Seq
         (939 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8UWL7 Cluster: Chromosome 17 open reading frame 27; n=...    34   6.0  
UniRef50_Q6YU12 Cluster: Putative uncharacterized protein P0435E...    34   6.0  

>UniRef50_Q8UWL7 Cluster: Chromosome 17 open reading frame 27; n=5;
            Clupeocephala|Rep: Chromosome 17 open reading frame 27 -
            Fugu rubripes (Japanese pufferfish) (Takifugu rubripes)
          Length = 4283

 Score = 33.9 bits (74), Expect = 6.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 278  SSGRAGGRTEPSNIILLRRCSHDELKSKTTIISFTSPAFREEINTL 141
            +SG+AG    P N IL+ +C  DE    T +I     +   EIN L
Sbjct: 2482 TSGKAGDTNRPCNKILIIQCDFDEASDSTKLIISAKHSSFNEINKL 2527


>UniRef50_Q6YU12 Cluster: Putative uncharacterized protein
           P0435E12.34; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0435E12.34 - Oryza sativa subsp. japonica (Rice)
          Length = 121

 Score = 33.9 bits (74), Expect = 6.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 460 PGCPRPGSAPAPRDGTL 510
           P CPRP SAP PRDG +
Sbjct: 66  PSCPRPSSAPEPRDGQI 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,576,230
Number of Sequences: 1657284
Number of extensions: 13074445
Number of successful extensions: 29104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29051
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86141029997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)