Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0483.Seq
         (939 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   4.5  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   4.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   4.5  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 292 TTNVHSLFIHFAFIILIWMWAFFFVDIFL*F 384
           TTN+  L ++  +++  W+ A    D+F+ F
Sbjct: 351 TTNIIILGLNVVYVVTAWICAITKRDMFVEF 381


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 292 TTNVHSLFIHFAFIILIWMWAFFFVDIFL*F 384
           TTN+  L ++  +++  W+ A    D+F+ F
Sbjct: 76  TTNIIILGLNVVYVVTAWICAITKRDMFVEF 106


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +1

Query: 313 FIHFAFIILIWMWAFFFV-DIFL*FSCF-EC-FYFLSPL 420
           + ++AFIIL+ ++ F++   IF     F  C +YF+ PL
Sbjct: 102 YFYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPL 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,608
Number of Sequences: 336
Number of extensions: 3478
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26375415
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)