Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0483.Seq
         (939 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14360| Best HMM Match : TFIIS_C (HMM E-Value=0.032)                 29   5.4  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               28   9.5  

>SB_14360| Best HMM Match : TFIIS_C (HMM E-Value=0.032)
          Length = 299

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 570 LKLMTCINISYIYRYVWLILEF 635
           +KL++C+ +S IY   WL LEF
Sbjct: 153 VKLISCMYVSVIYPLFWLALEF 174


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 223  RRRRMILLGSVRPPARPDDACSCTTNVHSLFIHFAFII 336
            +RRR  L   VR PA P+       N+ ++++H  FII
Sbjct: 1257 QRRRPTLAQRVRSPATPNTIKEPPKNLVTIYLHGTFII 1294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,673,849
Number of Sequences: 59808
Number of extensions: 396412
Number of successful extensions: 822
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)