Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0483.Seq
         (939 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.75 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   9.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   9.2  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 554 HLKNLT*ANDLYKYFVYISVCMVNIRVWVFTTH*TXG 664
           H+KN    N++ + + ++++ +  + +WVFT   T G
Sbjct: 460 HIKNADKDNEVIEDWKFVAMVLDRLFLWVFTLACTAG 496


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 594 ISYIYRYVWLILEFGCLPPTR 656
           ++Y+YR V  +LE G L P +
Sbjct: 243 VNYVYRSVDQVLEDGKLKPNK 263


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -3

Query: 307 SVRSLYTSTRRPGGPGVAQSRVISFSCADVLTTSSNPKQL*Y 182
           +V + Y    +P    V     I     DV+ T  NP QL Y
Sbjct: 556 NVANRYVYASQPDKDRVLVISEIQMVIVDVIPTDKNPVQLWY 597


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 587 YKYFVYISVCMVNIRVWV 640
           Y +  YI  C++ I  WV
Sbjct: 247 YLFHTYIPTCLIVIMSWV 264


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 415 ERENKNIRNMKTKEKYLRKKKPTS 344
           ERE K+ +N +   KY  + K  S
Sbjct: 44  EREQKSYKNERKYRKYRERSKERS 67


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 415 ERENKNIRNMKTKEKYLRKKKPTS 344
           ERE K+ +N +   KY  + K  S
Sbjct: 44  EREQKSYKNERKYRKYRERSKERS 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,606
Number of Sequences: 438
Number of extensions: 4557
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)