Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0476.Seq
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.7  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   8.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 267 RQRTGGRGDPRAKRCEGK 320
           R +T  RGDP   +CE K
Sbjct: 804 RNQTSRRGDPAVLQCEAK 821


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 282  PLSSAYRPLNTALFRKKNTNFPNSRSGXRSLADLRWP 172
            P  SA+R  + A  +++ +  PN  S  R    LR+P
Sbjct: 1409 PSISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYP 1445


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 282  PLSSAYRPLNTALFRKKNTNFPNSRSGXRSLADLRWP 172
            P  SA+R  + A  +++ +  PN  S  R    LR+P
Sbjct: 1409 PSISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYP 1445


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 243 REQY*EVGRQRTGGRGDPRAKRCEG 317
           +E++ E+GR +    G+    +CEG
Sbjct: 37  KEEFDELGRLQRICNGEVAVNKCEG 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,367
Number of Sequences: 336
Number of extensions: 3407
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)