Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0476.Seq
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    28   1.3  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   3.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   4.1  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   9.5  

>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 514 FNCILEQSVAFFNFKFLILTKLHCKLHVVVYI 419
           F  +L   VA F+F FL+L +L  + H + Y+
Sbjct: 10  FLYVLIAGVATFSFAFLVLNRLQAEEHSLAYV 41


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 459 KIKNLKLKKATDCSKMQLNSKQQIKSCILN*ISFENYKK*KTHIK 593
           KIK+ + K +    +M     ++IKSC+L+  SF+ Y K K H +
Sbjct: 769 KIKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKEYTK-KMHFR 812


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -1

Query: 393 PRNLE--IKYLEINPAILSTCTPSTVLSLHTALPVDPPVPLSSAY 265
           P+NL   I Y+  NP  +S  T    L LH AL       LS  Y
Sbjct: 828 PKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQY 872


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 187 RPKMADGFHFDRRLRTK 137
           RP  +DGF+FD  LR K
Sbjct: 197 RPTYSDGFNFDTTLREK 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,615
Number of Sequences: 5004
Number of extensions: 55678
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)