Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0476.Seq
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0655 + 30668706-30668849,30669043-30669471                       31   0.80 
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199...    29   4.3  
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149...    28   7.5  

>02_05_0655 + 30668706-30668849,30669043-30669471
          Length = 190

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -1

Query: 351 ILSTCTPSTVLSLHTALPVD-PPVPLSSAYRP--LNTALFRKKNTNFPNSRSGXRSLADL 181
           ++ T    ++L L    P   PP+P ++AY P   NT   R+++ + P  RSG R L   
Sbjct: 49  VIKTSQSGSLLRLGLVSPCSAPPLPTAAAYTPPHTNTPSSRRRH-HAPLVRSGLRLLGSS 107

Query: 180 RWPTASILIADYEPKPDRGRVQP 112
           R P    L     P+  RG   P
Sbjct: 108 RHPRRGSLNC---PRHCRGGFSP 127


>12_01_1021 -
           10419383-10419529,10419684-10419733,10419821-10419938,
           10420498-10420540,10420674-10420825,10420876-10420965,
           10422881-10423013,10424397-10424515
          Length = 283

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -1

Query: 576 IFYNFRMKSN*GYNF*FVVWNLTAF*NNQSLFLILNS 466
           +F NF+ KS  G NF F+V NLT      S +LI N+
Sbjct: 32  VFLNFKRKSVVGLNFDFLVLNLT----KHSSYLIYNA 64


>10_07_0015 +
           11813465-11813479,11814342-11814422,11814842-11814951,
           11815553-11815608,11816086-11816180,11817021-11817126,
           11817261-11817577,11817666-11817848,11817976-11818173,
           11819029-11819346,11819721-11819813
          Length = 523

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
 Frame = -1

Query: 330 STVLSLHTALPVDPPVPLSSAY---RPLNTALFRKKNTNFPNSRSGXRSLADLRWPTASI 160
           S++L  H     DP + ++  Y    P  + LF   +  FP   S      D   P +  
Sbjct: 46  SSILRTHLQA-YDPILSMTLRYLIRNPFQSLLFSMSSKQFPTCLSSHPLQVDAVQPFSWH 104

Query: 159 LIADYEPKP 133
           L+  YEPKP
Sbjct: 105 LLPFYEPKP 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,690,658
Number of Sequences: 37544
Number of extensions: 344812
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)