Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0476.Seq
(798 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48139| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18) 33 0.20
SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 4.4
SB_55261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_37087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_28870| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_20412| Best HMM Match : TUDOR (HMM E-Value=5.4) 28 7.6
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 28 7.6
>SB_48139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 34.3 bits (75), Expect = 0.12
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Frame = -1
Query: 402 LLIPRNLEIKYLEINPA-ILSTCTPSTVLSLHTALPVDPPVPLSSAYRPLNT------AL 244
LL RN + + ++P +L + T+L H L + PV + + L T A
Sbjct: 238 LLKYRNTPFEDIGVSPVQLLMSRRTRTMLPTHKRLLLPQPVNPDTVVKALKTRQEKAAAY 297
Query: 243 FRKKNTNFPNSRSGX----RSLADLRWPTASILIADYEPKPDRGRV 118
+ + + + P SG R+ + +W TA +L Y + DRGRV
Sbjct: 298 YNQNSKDLPPLESGSKARIRTGGEKQWKTAEVLPRSYMVQDDRGRV 343
>SB_41962| Best HMM Match : RVT_1 (HMM E-Value=1.4e-18)
Length = 1052
Score = 33.5 bits (73), Expect = 0.20
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Frame = -1
Query: 402 LLIPRNLEIKYLEINPA-ILSTCTPSTVLSLHTALPVDPPVPLSSAYRPLNT-----ALF 241
LL RN + + ++P +L + T+L H L + PV + + L T A +
Sbjct: 867 LLKYRNTPFEDIGVSPVQLLMSRRTRTMLPTHKRLLLPQPVNPDTVVKALKTRQEKAAAY 926
Query: 240 RKKNTNF-PNSRSGX----RSLADLRWPTASILIADYEPKPDRGRV 118
+N+ + P SG R+ ++ +W TA +L Y + DRGRV
Sbjct: 927 YNQNSKYLPPLESGSKVRIRTGSEKQWRTAEVLPRSYMVQDDRGRV 972
>SB_14466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 33.5 bits (73), Expect = 0.20
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Frame = -1
Query: 402 LLIPRNLEIKYLEINPA-ILSTCTPSTVLSLHTALPVDPPVPLSSAYRPLNT-----ALF 241
LL RN + + ++P +L + T+L H L + PV + + L T A +
Sbjct: 867 LLKYRNTPFEDIGVSPVQLLMSRRTRTMLPTHKRLLLPQPVNPDTVVKALKTRQEKAAAY 926
Query: 240 RKKNTNF-PNSRSGX----RSLADLRWPTASILIADYEPKPDRGRV 118
+N+ + P SG R+ ++ +W TA +L Y + DRGRV
Sbjct: 927 YNQNSKYLPPLESGSKVRIRTGSEKQWRTAEVLPRSYMVQDDRGRV 972
>SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 29.5 bits (63), Expect = 3.3
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Frame = -1
Query: 402 LLIPRNLEIKYLEINPA-ILSTCTPSTVLSLHTALPVDPPVPLSSAYRPLNT------AL 244
LL RN + + + P +L T+L H L + PV + + L T A
Sbjct: 604 LLKYRNTPFEDIGVLPVQLLMRRRTRTMLPTHKRLLLPQPVNPDTVVKALKTRQEKAAAY 663
Query: 243 FRKKNTNFPNSRSGX----RSLADLRWPTASILIADYEPKPDRGRV 118
+ + + + P SG R+ + +W TA +L + + DRGRV
Sbjct: 664 YNQNSKDLPPLESGSKVRIRTGGEKQWRTAEVLPRSHMVQDDRGRV 709
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 399 VTFTNLSI*TTTCSLQCNFVKIKNLKLKKATDCSKMQLNSKQQIKS 536
VTF N I C+++ + +++K ++KKA S M+ +Q+ S
Sbjct: 192 VTFDNDEIVEKVCAMKYHEIRMKQCEVKKAEPQSAMRKKDEQEYNS 237
>SB_55261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 357 PAILSTCTPSTVLSLHTALPVDPPVPLSSAYRPLNTA 247
P+++ C S S+HT PV P S+ Y P ++A
Sbjct: 23 PSLIYKCGLSKDTSIHTLAPVGPRRDASTVYYPCSSA 59
>SB_37087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.3 bits (60), Expect = 7.6
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Frame = -1
Query: 402 LLIPRNLEIKYLEINPAILSTCTPSTVLSLHTALPVDPPVPLSSAYRPLNT------ALF 241
LL RN + + ++P L T+L H L + PV + + L T A
Sbjct: 148 LLKYRNTPFEDIGVSPVQL--LMSRTMLPTHKRLLLPQPVNPDTVVKALKTRQDKAAAYC 205
Query: 240 RKKNTNFPNSRSGX----RSLADLRWPTASILIADYEPKPDRGRV 118
+ + + P SG R+ + +W TA +L Y + DRGRV
Sbjct: 206 NQNSKDLPPLESGSKVRIRTGGEKQWRTAEVLPRLYMVQEDRGRV 250
>SB_28870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Frame = -1
Query: 324 VLSLHTALPVDPPVPLSSAYRPLNT------ALFRKKNTNFPNSRSGX----RSLADLRW 175
+L H L + PV + + L T A + + + + P SG R+ ++ +W
Sbjct: 1 MLPTHKRLLLPQPVNPDTVVKALKTRQEKAAAYYNQNSKDLPPLESGSKVRIRTGSEKQW 60
Query: 174 PTASILIADYEPKPDRGRV 118
TA +L Y + DRGRV
Sbjct: 61 RTAEVLPRSYLVQDDRGRV 79
>SB_20412| Best HMM Match : TUDOR (HMM E-Value=5.4)
Length = 231
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 348 LSTCTPSTVLSLHTALPVDPPVPLSSAYRPLNTA 247
+STC S+HT PV P S+ Y P ++A
Sbjct: 149 MSTCIKLKHTSIHTLAPVGPRRDASTVYYPCSSA 182
>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 810
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 261 PLNTALFRKKNTNFPNSRSGXRSLADLRWPTASILIADYEPKPDRG-RVQPTTNAS 97
P+ + K++NF +SR R + + ++ + ++P+ ++G V PT++ S
Sbjct: 321 PVRKGKGKDKSSNFDDSRESVRKSGNAKKDAPALKSSPFQPEANKGAHVPPTSDGS 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,990,472
Number of Sequences: 59808
Number of extensions: 413428
Number of successful extensions: 877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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