Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0476.Seq
         (798 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB...    34   0.20 
AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA...    34   0.20 

>AE014296-2119|AAS65016.1|  750|Drosophila melanogaster CG5620-PB,
           isoform B protein.
          Length = 750

 Score = 34.3 bits (75), Expect = 0.20
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -1

Query: 399 LIPRNLEIKYLEINPAILSTCTPSTVLSLHTALPVDPPVPLSSAYRPL-NTALFRKKNTN 223
           L PR      L+ + AI  + + ST+ ++HT  P  P       Y P  +T     +N  
Sbjct: 570 LAPRRPSTLQLQASGAI--SASNSTLTTIHTTAPQAPAPTDFKYYSPQRSTDSNLMRNYP 627

Query: 222 FPNSRSGXRSLADLRWPTASILIADYEPKPDR 127
           FP +  G R  + +   +  + IA Y+P P R
Sbjct: 628 FPKAARGMRRQSTMSVDSQKVNIAGYQPLPMR 659


>AE014296-2118|AAF49939.2|  750|Drosophila melanogaster CG5620-PA,
           isoform A protein.
          Length = 750

 Score = 34.3 bits (75), Expect = 0.20
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -1

Query: 399 LIPRNLEIKYLEINPAILSTCTPSTVLSLHTALPVDPPVPLSSAYRPL-NTALFRKKNTN 223
           L PR      L+ + AI  + + ST+ ++HT  P  P       Y P  +T     +N  
Sbjct: 570 LAPRRPSTLQLQASGAI--SASNSTLTTIHTTAPQAPAPTDFKYYSPQRSTDSNLMRNYP 627

Query: 222 FPNSRSGXRSLADLRWPTASILIADYEPKPDR 127
           FP +  G R  + +   +  + IA Y+P P R
Sbjct: 628 FPKAARGMRRQSTMSVDSQKVNIAGYQPLPMR 659


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,549,081
Number of Sequences: 53049
Number of extensions: 604875
Number of successful extensions: 1521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)