Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0476.Seq
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15340.1 68417.m02346 pentacyclic triterpene synthase (04C11)...    29   2.7  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    29   4.7  
At3g52680.1 68416.m05803 F-box family protein contains F-box dom...    28   8.3  

>At4g15340.1 68417.m02346 pentacyclic triterpene synthase (04C11)
           identical to pentacyclic triterpene synthase
           [gi:6650208] [PMID:11247608]
          Length = 766

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 276 SSAYRPLNTALFRKKNTNFPNSRSGXRSLADLRWPTASILIADYEPKPDRGRVQ 115
           ++A  P   A   +   NF N+RS  ++ ADL W    +    +E K  R RV+
Sbjct: 32  ANAGSPQELAEVEEARRNFSNNRSHYKASADLLWRMQFLREKGFEQKIPRVRVE 85


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -1

Query: 276 SSAYRPLNTALFRKKNTNFPNSRSGXRSLADLRWPTASILIADYEPKPDRGRVQ 115
           ++A  P   +   +   NF N+RS  ++ ADL W    +   ++E K  R R++
Sbjct: 32  ANAGSPAELSEVDQARQNFSNNRSQYKACADLLWRMQFLREKNFEQKIPRVRIE 85


>At3g52680.1 68416.m05803 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 456

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -1

Query: 357 PAILSTCTPSTVLSLHTALPVDPPVP-LSSAYRPLNTALFR-KKNTNFPNSRSGXRSLAD 184
           P+ L TC     L L   + VD P P L  + R L+    R K  ++  N  SG   L +
Sbjct: 141 PSSLCTCNTLETLKLVLCILVDIPSPVLMKSLRTLHLEFVRYKDESSVRNLLSGCPGLEE 200

Query: 183 LR 178
           LR
Sbjct: 201 LR 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,954
Number of Sequences: 28952
Number of extensions: 284808
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)