Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0472.Seq
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.2  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   5.5  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   5.5  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    25   9.6  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.6  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 51  IKLFINLSLDINIR*XRPSSLPRTVIDNV 137
           ++ ++N+  DIN++   P+S P  +ID V
Sbjct: 418 LRTYMNILSDINVKIRSPTSTPTPLIDAV 446


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +1

Query: 478 DHLDVAQLAPQRPHEFFTXPVVHALLVGAVTHHQNPVVQVSGG 606
           ++LD+++L+P  P        ++   +G V H ++ VV+   G
Sbjct: 3   ENLDISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAISG 45


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 275 FYKFKNQLEVSQT*GRQYHNWPPTAVRXWAIHVGFSSS 162
           F+  +NQ+ V+QT   +   +P TA    AIH   SS+
Sbjct: 363 FFDVENQVSVAQTPSVKPEMFPKTARPFAAIHANASST 400


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 111 LPRTVIDNVGRSSPL 155
           LPRTV+ N  RSSPL
Sbjct: 183 LPRTVVFNRNRSSPL 197


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 202 AVGGQLWYCRPQVCETSN*FLNL*NITKV 288
           AVG + W CR    E+ N   NL N+  V
Sbjct: 448 AVGNRFWQCRTLSTESLNFSTNLNNVVFV 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,123
Number of Sequences: 5004
Number of extensions: 36404
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)