Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0467.Seq
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   3.8  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.0  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.0  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   8.8  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   8.8  

>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 422 APESTRSSKRTLLRGRESVPPIHEHPAAQ 508
           AP++T SS   L + ++S+P  +EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 441 PVKGLYSEVGSRCRRFTNIP 500
           P+ GL+  VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 462 EVGSRCRRFTNIPRHNMFI*HLFYTLALSSFIVKLILVFTSVIVTVRIAKASCG 623
           E G     F+N+  HN F  H+F +     F + +I       V  R A  S G
Sbjct: 122 EKGFDILSFSNVKNHNRFYAHVFLSWLFFGFTIFIIYRELRYYVIFRHAMQSSG 175


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 292 SVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 417
           + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 233 TACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -3

Query: 294 GFHLSTVSAVLFEPSP--GLNFISVVLKVEEVTKLY 193
           GF+++  ++  F+PSP   L   S+VL +E+++ L+
Sbjct: 245 GFYVNNCTSTKFDPSPCDDLQSHSLVLLLEQLSPLF 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,857
Number of Sequences: 5004
Number of extensions: 51052
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)