Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0467.Seq
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_44101| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   7.1  
SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)                      28   9.4  
SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)                    28   9.4  

>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 KPPTLSPRPWSSVRMVTNTI 200
           KP  L P PW  VR+ TN I
Sbjct: 56  KPNPLGPEPWYKVRLPTNVI 75


>SB_44101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 438 GPVKGLYSEVGSRCRRFTNIPRHNMFI*HLFYTLALSSFIVKLILVFTSVIVTVRIAKAS 617
           G  +  Y +VGS C R T  PR           L++ + +   +    S  V ++ +KAS
Sbjct: 109 GVTRLAYKKVGSTCSRMTISPRSGS---SKKKDLSMGTILFHKVFAQNSSPVFLKFSKAS 165

Query: 618 CG 623
           CG
Sbjct: 166 CG 167


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 141 KPPTLSPRPWSSVRMVTNTI 200
           KP  L P PW  VR+ TN I
Sbjct: 81  KPNPLGPEPWYKVRLPTNVI 100


>SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)
          Length = 564

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 279 TVSAVLFEPSPGLNFISVVLKVEEVTKLYSSPSLRSSTVGVTA 151
           T   ++  P PG N    V      T L + P+   +TVGV+A
Sbjct: 467 TTRTIITVPEPGNNSSQFVPTTTVTTSLQTLPTYEEATVGVSA 509


>SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/63 (26%), Positives = 22/63 (34%)
 Frame = -3

Query: 417 HVLSCHHSFHLLRAEFPDVSDFKTVXXXXXXLQGVAFECAYGFHLSTVSAVLFEPSPGLN 238
           H + CHH    L   F  VS            +   F   YG HL+    +LF      N
Sbjct: 31  HSMPCHHLLCALWDAFNGVSSSTMCITECIQWRVTIFYVHYGMHLTACHHLLFALRDAFN 90

Query: 237 FIS 229
            +S
Sbjct: 91  SVS 93


>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
          Length = 331

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/63 (26%), Positives = 22/63 (34%)
 Frame = -3

Query: 417 HVLSCHHSFHLLRAEFPDVSDFKTVXXXXXXLQGVAFECAYGFHLSTVSAVLFEPSPGLN 238
           H + CHH    L   F  VS            +   F   YG HL+    +LF      N
Sbjct: 31  HSMPCHHLLCALWDAFNGVSSSTMCITECIQWRVTIFYVHYGMHLTACHHLLFALRDAFN 90

Query: 237 FIS 229
            +S
Sbjct: 91  SVS 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,739,435
Number of Sequences: 59808
Number of extensions: 400655
Number of successful extensions: 960
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)