Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0467.Seq
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    78   6e-15
AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    73   2e-13
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    71   7e-13
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    67   1e-11
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    62   3e-10
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    62   3e-10
U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding p...    36   0.023
U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding p...    31   0.66 
U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding p...    31   0.66 
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    30   2.0  
U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding p...    29   4.7  
U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding p...    29   4.7  
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    29   4.7  
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     29   4.7  

>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 36/67 (53%), Positives = 50/67 (74%)
 Frame = +2

Query: 53  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 232
           +F+G+ +K+  +ENFDE+MK IGVGLITRKAA  + P +E+R DG+ +N    STFK T+
Sbjct: 6   DFIGR-WKLVQTENFDEYMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTK 64

Query: 233 MKFKPGE 253
           + FK GE
Sbjct: 65  LSFKLGE 71


>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/70 (50%), Positives = 50/70 (71%)
 Frame = +2

Query: 44  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 223
           +  EFVG+ +K+  SENF+E+MK +GVGLITRKAA  + PT+E++ +GD +     STFK
Sbjct: 1   MSQEFVGR-WKLIHSENFEEYMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFK 59

Query: 224 TTEMKFKPGE 253
            T + FK G+
Sbjct: 60  NTTLSFKLGQ 69


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = +2

Query: 53  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 232
           EF+G+ +K+  SENF+E++K IGVGL+ RKAA+  +PT+E++ DGD ++    STFK  +
Sbjct: 6   EFIGR-WKLVHSENFEEYLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNK 64

Query: 233 MKFK 244
           + FK
Sbjct: 65  LAFK 68


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 29/66 (43%), Positives = 50/66 (75%)
 Frame = +2

Query: 53  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 232
           +FVG+ +K+  SENF++++K +GVGL+ RKAA A  PT+E++ +G+++++   STFK T 
Sbjct: 5   QFVGR-WKLVESENFEDYLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTT 63

Query: 233 MKFKPG 250
           ++F  G
Sbjct: 64  LEFTLG 69


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +2

Query: 44  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 223
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE+ + ++STFK
Sbjct: 3   IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 61

Query: 224 TTEMKFKPGEGS-KRTA 271
              +K+K G  S ++TA
Sbjct: 62  NYTLKWKLGTASDEKTA 78



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 EEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVY 435
           +E  ADG  V SV + E + L Q++    G + + +  +    ++  V T   V CTRVY
Sbjct: 74  DEKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVY 133

Query: 436 K 438
           +
Sbjct: 134 E 134


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +2

Query: 44  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFK 223
           I+ + VGK +   SSENFDE++K +GVG   R  A    P +E   +GDE+ + ++STFK
Sbjct: 18  IQTDLVGK-WNFVSSENFDEYLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFK 76

Query: 224 TTEMKFKPGEGS-KRTA 271
              +K+K G  S ++TA
Sbjct: 77  NYTLKWKLGTASDEKTA 93



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 259 EEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVY 435
           +E  ADG  V SV + E + L Q++    G + + +  +    ++  V T   V CTRVY
Sbjct: 89  DEKTADGRDVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVY 148

Query: 436 K 438
           +
Sbjct: 149 E 149


>U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding
           protein protein 4 protein.
          Length = 145

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 41  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAAN--AVTPTVELRKDGDEYNLVTSS 214
           S+  +F G+ Y++  SENFDEF+ + GV    R+      +T  +   ++  +YN+   +
Sbjct: 2   SVPDKFFGR-YQLDKSENFDEFLSSKGVNWFVRQMIKLAGLTKIISQNQEAGKYNMENLT 60

Query: 215 TFKTT 229
           + K T
Sbjct: 61  SKKNT 65


>U28991-8|AAM22060.1|  517|Caenorhabditis elegans Hypothetical
           protein F08F8.9c protein.
          Length = 517

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 83  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEGSK 262
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP +  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 263 R 265
           +
Sbjct: 62  Q 62


>U28991-7|AAK68312.1|  626|Caenorhabditis elegans Hypothetical
           protein F08F8.9a protein.
          Length = 626

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 83  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEGSK 262
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP +  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 263 R 265
           +
Sbjct: 62  Q 62


>U28991-6|AAK68313.1|  624|Caenorhabditis elegans Hypothetical
           protein F08F8.9b protein.
          Length = 624

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 83  SSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEGSK 262
           SSE  ++ +  IGV L  RK  +A  P      DG+    V +ST K  E K KP +  K
Sbjct: 2   SSEWDNKIIPVIGVPLEARKLPSARIPKKPKETDGNSTETVVNSTEKPEERKEKPPKPPK 61

Query: 263 R 265
           +
Sbjct: 62  Q 62


>U40420-6|ABD63223.1|  150|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform b protein.
          Length = 150

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 44  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 217
           I  +F GK Y +  SENFDEF+   GV    R+       +  L K+    +YN+   ++
Sbjct: 8   IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 66

Query: 218 FKTT 229
            K T
Sbjct: 67  KKNT 70


>U40420-5|AAA81433.2|  165|Caenorhabditis elegans Lipid binding
           protein protein 3,isoform a protein.
          Length = 165

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +2

Query: 44  IKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKD--GDEYNLVTSST 217
           I  +F GK Y +  SENFDEF+   GV    R+       +  L K+    +YN+   ++
Sbjct: 23  IPEKFFGK-YDLDRSENFDEFLAAKGVSWFVRQMIKLAKVSKVLAKNETPGKYNMENLTS 81

Query: 218 FKTT 229
            K T
Sbjct: 82  KKNT 85


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = -3

Query: 249 PGLNFISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSS 97
           PGL F S++ K   VT    S +L SST    + +A+  I PT  +F NSS
Sbjct: 842 PGL-FGSILDKETHVTTTPVSVALPSSTDSTQSKSAIPTIAPTMSLFGNSS 891


>U40420-8|AAA81435.1|  161|Caenorhabditis elegans Lipid binding
           protein protein 2 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 71  YKMTSSENFDEFMKTIGVGLITRKAANAVT 160
           + +  SENFDE++   G G  TRK     T
Sbjct: 30  FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 59


>U40420-7|AAA81434.1|  159|Caenorhabditis elegans Lipid binding
           protein protein 1 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 71  YKMTSSENFDEFMKTIGVGLITRKAANAVT 160
           + +  SENFDE++   G G  TRK     T
Sbjct: 28  FDLDHSENFDEYLTAKGYGWFTRKLVTFAT 57


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 250 RRFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKA 396
           RR+ +     ++V+ VC+        +     G + T+VR  G EE KA
Sbjct: 39  RRYRDVLEASSEVRHVCSLADKLASDIANTRVGYQSTHVRTGGREEQKA 87


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 250 RRFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKA 396
           RR+ +     ++V+ VC+        +     G + T+VR  G EE KA
Sbjct: 39  RRYRDVLEASSEVRHVCSLADKLASDIANTRVGYQSTHVRTGGREEQKA 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,243,219
Number of Sequences: 27780
Number of extensions: 294454
Number of successful extensions: 720
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)