Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0465.Seq
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    94   1e-20
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    93   3e-20
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    90   2e-19
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.7  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   1.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.2  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.8  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   3.8  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   5.1  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 39/68 (57%), Positives = 59/68 (86%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 230 KLSSMPVG 253
           KL+++P G
Sbjct: 61  KLATVPTG 68


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 39/66 (59%), Positives = 59/66 (89%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 230 KLSSMP 247
           KLS++P
Sbjct: 61  KLSTVP 66


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 37/68 (54%), Positives = 59/68 (86%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 230 KLSSMPVG 253
           KL+++P G
Sbjct: 61  KLATVPSG 68


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 186 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 58
           SSV T LS S S+SIP  +     STS ++  V+P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52



 Score = 25.0 bits (52), Expect = 6.7
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -3

Query: 234 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYA 64
           SF+ PA+ S  TSL  SS     S S S +  +   + S+S+A+    P S++S +A
Sbjct: 70  SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = -3

Query: 258 SAPTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSPSASIPTELRIFSTSAAAGVVLP 88
           +APT    S+   +++  S+S P SS    +T  S S S+   T     STS++      
Sbjct: 200 AAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSS 259

Query: 87  PSTASKYAAT 58
            STAS  +++
Sbjct: 260 SSTASSSSSS 269


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 201 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 67
           + L + S  T +S S   S+PT+  +  T + +  V PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 47   KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 208
            K+R +    +  L  ++T  +   E+   + G+E+ G+K K ++ E  NGK +++
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 255 APTGIDDSFSRPAAISCS-TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPST 79
           A T     F+   A + + T LP ++V T  SFS SAS  T     +++    +V PPST
Sbjct: 18  AQTEYTPGFTTDVATTVTPTPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPST 75

Query: 78  ASKYAAT 58
           +     T
Sbjct: 76  SHNSTTT 82


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 216 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 73
           ++S S+ L  S++ T  S   +AS+PT   I S S        P+T+S
Sbjct: 79  SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = -3

Query: 258 SAPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGV 97
           S PTG   S S P         + STS+P+    T  + + S+ +PT     STS     
Sbjct: 234 SIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTST 289

Query: 96  VLPPSTASKYAAT 58
            +PP+  S    T
Sbjct: 290 SIPPTGNSTTPVT 302


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 45  KKCVTWPRIYWLCWV 89
           +K  +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 45  KKCVTWPRIYWLCWVARPRQLPLTLRRSSAPSVSKLTVRSLRK*SLSST 191
           KK + + +I W  WV R   +P      S PS S      L   SLS++
Sbjct: 161 KKGIQFEKIGWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 234 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 76
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,115
Number of Sequences: 5004
Number of extensions: 19585
Number of successful extensions: 93
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)