Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0465.Seq
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    76   2e-14
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    71   4e-13
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    31   0.37 
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           MRYV+AYLLAVLGG   P   D++ ILS+VG++AD E  K V++ L GK VE+LIA G  
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSA 60

Query: 230 KLSSMPVGA 256
            L S+  GA
Sbjct: 61  GLVSVSGGA 69


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+Y+ AYLLA LGG  +P+A DV K+L + G++ D E    V+  L GK + ++IA G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 230 KLSSMPVG 253
           KLSS+P G
Sbjct: 61  KLSSVPSG 68


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 95  TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 214
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 95  TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 214
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
 Frame = -3

Query: 258  SAPTG--IDDSFSRPAAISCS-TSLPLSSVIT------FLSFSPSASIPTELRIFSTSAA 106
            SAPT   +  + + P+  + S  +LP  SV T       L+  P +S PT   + ST+ A
Sbjct: 2226 SAPTSGAVSSTTNTPSPTNQSPVTLPPPSVATAGPTGPILTVVPVSSAPTSGAVSSTATA 2285

Query: 105  AGVVLPPSTASKYAAT*RIF*VLI 34
            A V+    T+S  + +  +F VLI
Sbjct: 2286 APVITTTKTSSVLSVSFSMFIVLI 2309


>AF106589-3|AAT81179.1|  511|Caenorhabditis elegans Hypothetical
           protein Y44E3A.4 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 210 SCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYA 64
           S ST  P+S+ +   + +   SIP+     S+   +  + PPS+ASK A
Sbjct: 436 SISTVNPMSASMFVPATAKEISIPSNSSATSSPFKSSSIAPPSSASKPA 484


>AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical
           protein Y9C9A.12 protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  RHYTFRVN*DLKNALRGRVFTGCAGWQDHASC 108
           +H+T R++ D+KN  R + FT      +  SC
Sbjct: 98  KHFTIRISDDIKNKNRDQCFTRILNTLNSKSC 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,505,500
Number of Sequences: 27780
Number of extensions: 109644
Number of successful extensions: 421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)