Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0465.Seq
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       81   3e-16
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       81   3e-16
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       81   3e-16
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    78   3e-15
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    78   3e-15
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       78   4e-15
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    67   6e-12
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    66   1e-11
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    31   0.61 
At1g67140.1 68414.m07638 expressed protein                             29   2.5  
At3g62850.1 68416.m07061 zinc finger protein-related contains Pf...    27   5.7  
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont...    27   7.5  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   9.9  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/68 (54%), Positives = 53/68 (77%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 230 KLSSMPVG 253
           KL+S+P G
Sbjct: 61  KLASVPSG 68


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/68 (54%), Positives = 53/68 (77%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 230 KLSSMPVG 253
           KL+S+P G
Sbjct: 61  KLASVPSG 68


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/68 (54%), Positives = 53/68 (77%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 230 KLSSMPVG 253
           KL+S+P G
Sbjct: 61  KLASVPSG 68


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 33/68 (48%), Positives = 53/68 (77%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 230 KLSSMPVG 253
           KL+S+P G
Sbjct: 61  KLASVPSG 68


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 33/68 (48%), Positives = 53/68 (77%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 230 KLSSMPVG 253
           KL+S+P G
Sbjct: 61  KLASVPSG 68


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 35/68 (51%), Positives = 51/68 (75%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+ VAA+LLAVL GK +P   D++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 230 KLSSMPVG 253
           KL+S+P G
Sbjct: 61  KLASVPSG 68


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+ VAAYLLA L G   P+ AD++KI+ SVG E D EK+    + +  +DV +LIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 230 KLSSMPVG 253
           K++++  G
Sbjct: 61  KMAALSSG 68


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +2

Query: 50  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 229
           M+ +AA+LLA LGG   P + D++KIL SVG E D  K+  + + +   DV +LIAAGRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 230 KLSSMPVG 253
           K+S++  G
Sbjct: 61  KMSALSSG 68


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +2

Query: 119 EKILSSVGIEADGEKLKKVITELNGKDVE----QLIAAGREKLSSMP 247
           E++L   G+E     +K+++TE NG+ +E    +L+A+G+  L   P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 235  QLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVS 110
            Q L++GR      L+++L    L++L+ SF  D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444


>At3g62850.1 68416.m07061 zinc finger protein-related contains Pfam
           profiles PF04396: Protein of unknown function DUF537,
           weak hit to PF00096: Zinc finger, C2H2 type
          Length = 472

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = -3

Query: 261 CSAPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTEL--RIFSTSAAAGVVLP 88
           C  P G D    RP+  +    L  S  I+   +      P ++   + ST  A   ++P
Sbjct: 25  CPIPEGYDARLVRPSIEAAFNELGYSGPISITGYGDQRETPCQILRGLSSTGVAVAQIIP 84

Query: 87  PSTAS 73
            S  S
Sbjct: 85  ESRCS 89


>At4g29880.1 68417.m04252 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 404

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -2

Query: 244 H*RQLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVSGSWRGLATQHSQ*IR 65
           H +++  S   +L N++A+++    +K L  S        +LNVSG++     Q  Q  R
Sbjct: 87  HIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSLPQTIQNCR 146

Query: 64  GHVTHFLSPN 35
            H +    PN
Sbjct: 147 FHTSTKSGPN 156


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
            DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 184  LSDYFLKLLTVSFDTDGAEDLLNVSG---SWRGL 92
            L+ YF ++   SF  D   +L NVSG    W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,094,346
Number of Sequences: 28952
Number of extensions: 104488
Number of successful extensions: 330
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)