Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0461.Seq
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   128   1e-30
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   122   5e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.15 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    31   0.26 
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    28   1.8  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   4.2  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   4.2  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.5  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   7.3  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    26   7.3  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   9.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  128 bits (308), Expect = 1e-30
 Identities = 62/84 (73%), Positives = 68/84 (80%)
 Frame = +1

Query: 259 VISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 438
           VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q I 
Sbjct: 79  VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIK 138

Query: 439 EASYVNIPVIALCNTDSPLRFVDM 510
           EAS+VNIPVIALC+TDS L  VD+
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDV 162



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 38/67 (56%), Positives = 53/67 (79%)
 Frame = +2

Query: 53  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 232
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 233 AIENPAD 253
            IENPAD
Sbjct: 70  TIENPAD 76



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 34/57 (59%), Positives = 43/57 (75%)
 Frame = +3

Query: 510 AIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWDVVVXMFFYRDPEESEKDEQQ 680
           AIP N K   SIGL W+LLAREVLRLRG + R   W+V+  ++FYRDPEE E++E+Q
Sbjct: 163 AIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  122 bits (295), Expect = 5e-29
 Identities = 58/84 (69%), Positives = 67/84 (79%)
 Frame = +1

Query: 259 VISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 438
           V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q I 
Sbjct: 78  VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIK 137

Query: 439 EASYVNIPVIALCNTDSPLRFVDM 510
           EAS+VNIPVIALC+TDS L  VD+
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDI 161



 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 37/71 (52%), Positives = 55/71 (77%)
 Frame = +2

Query: 41  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 220
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 221 RAVVAIENPAD 253
           R +  IENPAD
Sbjct: 65  RVIATIENPAD 75



 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +3

Query: 510 AIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWDVVVXMFFYRDPEESEKDEQQAK 686
           AIP N K   SIGL+W+LLAREVLR+RG L R   WDV+  ++FYRDPEE E++E+  K
Sbjct: 162 AIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 388 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 504
           P L+++L+P ++     EA   ++P I + +TD+  R V
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMV 218


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = -3

Query: 801 CSKLGRYLQPNEALLXCFIXVFMDRSNYFWFSW--YHSLFPWLV 676
           C  LG    P   L    I  FM  +  FW SW  Y+S   W+V
Sbjct: 433 CLALGGKPDPEARLPPMMIGCFMFPAGIFWLSWSGYYSYVHWIV 476


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = -2

Query: 292 QHADRRAVMR*RTISGVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVXIFC 113
           +H D   + +   I+G++  YD+     +F   + +V +     + F  I + ++V +F 
Sbjct: 31  EHMDSMILSKLPRINGIVLAYDNI----RFLEKSAKVMY----DSPFSFIWVRVDVLVFS 82

Query: 112 PKMGGCSKHFGDIFLVEGEHV 50
           PK G C +  G I LV   H+
Sbjct: 83  PKKGDCLE--GKINLVSPSHI 101


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = -3

Query: 780 LQPNEALLXCFIXVFMDRSNYFWFSW----YHSLFPWLV 676
           + P + L   F    M   + FWF+W    YH    W+V
Sbjct: 403 MSPEDRLYPLFFGSIMLPISMFWFAWTCYPYHPYVHWIV 441


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 702 YHSLFPWLVVHPFHFLQGHGRRTXQXQ-HPSAGXXEAHHEA 583
           Y  + P+  VHP   L+GH R+    Q HP+A    A   A
Sbjct: 115 YTVMEPYEDVHPIAELKGHSRKVGLVQYHPTAANVLASSSA 155


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -3

Query: 774 PNEALLXCFIXVFMDRSNYFWFSW--YHSLFPWLV 676
           P + L   FI  F+   + FWF+W  Y     W+V
Sbjct: 412 PEDRLYPLFIGCFLLPISMFWFAWTCYPHHIHWIV 446


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 438 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 271
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = -3

Query: 801 CSKLGRYLQPNEALLXCFIXVFMDRSNYFWFSW--YHSLFPWLV 676
           C   G    P   L    I  FM  +  FW SW  ++S   W+V
Sbjct: 434 CLAQGGKPDPEARLPPMMIGCFMFPAGIFWLSWSGHYSYVNWVV 477


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -3

Query: 795 KLGRYLQPNEALLXCFIXVFMDRSNYFWFSW--YHSLFPWLVVHPFHFLQGHG 643
           K G    P   L    I  F+  +  FW +W  Y++   W+V      L G G
Sbjct: 439 KAGNKPAPEARLPPMMIGSFLFPAGIFWLAWSGYYTYVHWIVPTLSGLLTGAG 491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,516
Number of Sequences: 5004
Number of extensions: 69952
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)