Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0461.Seq
(812 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 157 1e-38
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.1
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.6
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 5.9
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 5.9
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 157 bits (380), Expect = 1e-38
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = +1
Query: 259 VISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 438
VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP DHQP+T
Sbjct: 76 VISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVT 135
Query: 439 EASYVNIPVIALCNTDSPLRFVDM 510
EASYVNIPVIA CNTDSPLR VD+
Sbjct: 136 EASYVNIPVIAFCNTDSPLRHVDV 159
Score = 113 bits (272), Expect = 2e-25
Identities = 50/73 (68%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 214
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 215 AARAVVAIENPAD 253
AAR +V IENPAD
Sbjct: 61 AARIIVTIENPAD 73
Score = 88.2 bits (209), Expect = 7e-18
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = +3
Query: 510 AIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWDVVVXMFFYRDPEESEKDEQQA 683
AIPCN K HSIGLM+WLLAREVLR+RG + R W+++ ++FYRDPEE+EK+EQ A
Sbjct: 160 AIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQAA 217
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +1
Query: 406 LDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDML 513
LDP +HQPIT+ + I ++A TD+PL+F L
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKFKGFL 151
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 480 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRST 316
V SN +V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 876 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 293 TAR*PKGRDEMTNHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVCRHRS 138
T+R R E + H+R RQHE+ R+++S H +H RH++
Sbjct: 51 TSRHETSRHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHGRSRHKT 101
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 537 HSIGLMWWLLAREVLRLRGVLP 602
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 330 CGAFHTRCFY*PDSSCIP*TSSLDCIGPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGH 509
C H+ C SSCI S+ DCI C+ PS F C+ +C T++C +
Sbjct: 866 CKKCHSSC-----SSCIG-PSANDCI-TCSDPSNALIGFTCKANCTPGQFKNTATRVCEN 918
Query: 510 AIP-CNTKSS 536
P C + SS
Sbjct: 919 CHPTCASCSS 928
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 480 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 322
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 272 RDEMTNHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVCRHRS 138
R E + H+R RQHE+ R+++S H +H RH++
Sbjct: 18 RHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHERSRHKT 61
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 480 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRR 322
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,585,780
Number of Sequences: 59808
Number of extensions: 580569
Number of successful extensions: 1487
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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