Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0461.Seq
(812 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 126 1e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 121 5e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 121 5e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 36 0.032
At2g22340.1 68415.m02651 hypothetical protein 34 0.13
At1g51250.1 68414.m05764 expressed protein similar to hypothetic... 30 1.6
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.1
At1g51240.1 68414.m05763 hypothetical protein similar to hypothe... 29 2.8
At1g13470.1 68414.m01578 expressed protein 29 2.8
At1g18460.1 68414.m02303 lipase family protein similar to triacy... 29 4.9
At4g14930.1 68417.m02293 acid phosphatase survival protein SurE,... 28 6.4
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica... 28 6.4
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 126 bits (305), Expect = 1e-29
Identities = 58/89 (65%), Positives = 70/89 (78%)
Frame = +1
Query: 244 PR*WFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 423
P+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 424 HQPITEASYVNIPVIALCNTDSPLRFVDM 510
HQPI E + NIP+IA C+TDSP+RFVD+
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDI 163
Score = 87.4 bits (207), Expect = 1e-17
Identities = 39/66 (59%), Positives = 48/66 (72%)
Frame = +2
Query: 56 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 235
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 236 IENPAD 253
IENP D
Sbjct: 72 IENPQD 77
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +3
Query: 489 PTKICGHAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWDVVVXMFFYRDPEESE- 665
P + IP N K HSIG ++WLLAR VL++RG + Q+WDV+V +FFYR+PEE++
Sbjct: 157 PMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKP 216
Query: 666 KDEQQA 683
+DE +A
Sbjct: 217 EDEDEA 222
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 121 bits (292), Expect = 5e-28
Identities = 56/89 (62%), Positives = 67/89 (75%)
Frame = +1
Query: 244 PR*WFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 423
P+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 424 HQPITEASYVNIPVIALCNTDSPLRFVDM 510
HQPI E + NIP IA C+TDSP+ FVD+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +2
Query: 68 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 247
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 248 AD 253
D
Sbjct: 77 KD 78
Score = 73.7 bits (173), Expect = 1e-13
Identities = 29/53 (54%), Positives = 42/53 (79%)
Frame = +3
Query: 513 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWDVVVXMFFYRDPEESEKD 671
IP N K HSIG ++WLLAR VL++RG + Q+WDV+V +FFYR+PEE++++
Sbjct: 166 IPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMVDLFFYREPEEAKQE 218
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 121 bits (292), Expect = 5e-28
Identities = 56/89 (62%), Positives = 67/89 (75%)
Frame = +1
Query: 244 PR*WFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 423
P+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 424 HQPITEASYVNIPVIALCNTDSPLRFVDM 510
HQPI E + NIP IA C+TDSP+ FVD+
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDI 164
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +2
Query: 68 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 247
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 248 AD 253
D
Sbjct: 77 KD 78
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +3
Query: 513 IPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWDVVV 629
IP N K HSIG ++WLLAR VL++RG + Q+WDV+V
Sbjct: 166 IPANNKGKHSIGCLFWLLARMVLQMRGTILAAQKWDVMV 204
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 388 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDMLSHATPS 531
P ++V D + I EAS + IPV+A+ + + PL F + +++ P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 106 SWGRKCXLPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 225
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At1g51250.1 68414.m05764 expressed protein similar to hypothetical
protein GB:AAD30637
Length = 139
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 482 QTPH*DLWTCYPMQHQVFPLYWFDVVV 562
Q PH + W C + H P YWFD+ V
Sbjct: 73 QLPHGEKWYCL-ISHGTRPKYWFDIEV 98
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 343 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 444
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At1g51240.1 68414.m05763 hypothetical protein similar to
hypothetical protein GB:AAD30637
Length = 127
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 482 QTPH*DLWTCYPMQHQVFPLYWFDVVV 562
Q PH + W C + H P YW+D+ V
Sbjct: 61 QLPHGERWYCL-LSHGTRPKYWYDIEV 86
>At1g13470.1 68414.m01578 expressed protein
Length = 379
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 495 KICGHAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRXQRWD 620
K+ G I NTK G+ W+ +A + + LR V+ +W+
Sbjct: 271 KLEGQEIGKNTKRVDENGVFWFAVAEKRIGLRSVVMERMKWE 312
>At1g18460.1 68414.m02303 lipase family protein similar to
triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
{Canis familiaris} [SP|P80035]
Length = 701
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 659 FFRVTVEEHXNXNIPALVTXKHTTKPQHFTCQQP 558
F+R ++ EH +IPA++ H K QP
Sbjct: 388 FWRYSINEHATEDIPAMIEKIHEIKTSELKLYQP 421
>At4g14930.1 68417.m02293 acid phosphatase survival protein SurE,
putative similar to Swiss-Prot:P36664 acid phosphatase
surE (EC 3.1.3.2) (Stationary-phase survival protein
surE) [Escherichia coli O157:H7]; contains Pfam domain
PF01975: Survival protein SurE
Length = 315
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 456 HSCDCFVQHRLPTKICGHAIPCNTKSSHSIGLMWWLLARE 575
H CF+ LPT I H T+ S+G M W E
Sbjct: 180 HPMQCFLNIDLPTDIANHKGYKLTRQGKSMGKMGWRQVEE 219
>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|P41410
DNA repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1256
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 711 FSWYHSLFPWLVVHPFHFLQGHGRRT 634
++WY W + P H L HGRRT
Sbjct: 748 YTWYKEFIKWEIPVPVHLL--HGRRT 771
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,571
Number of Sequences: 28952
Number of extensions: 391188
Number of successful extensions: 921
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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