Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0460.Seq
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   2.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.7  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   4.7  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   6.2  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   8.2  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 175 FLSLFHTAFSATQHRSYLRITSQEFTTYHWILSSKLW-SVCLLS 303
           F+ +F   FS+ ++  ++ + S     + W    K+W   C LS
Sbjct: 529 FIDIFEQTFSSKKNAKFISMASTSARRFRWKTCLKIWKEACKLS 572


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 47   TLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 145
            TL   CI+ F+ N  QFA+  F V  R ++ WL
Sbjct: 1356 TLTALCISPFLYNPHQFAWTDFFVDYREFMRWL 1388


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 134 CTL**QLKMNKMQIVINYLQIQQYNAASMCLIYKIATHYK 15
           C L   L+ NK  ++I YL I+ ++A  MC+ +  + + K
Sbjct: 46  CLLNFSLRENKNYLIIVYLPIEGFSANHMCISHGTSFNIK 85


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 32   FYKLDTLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 145
            ++ + TL   CI+ F+ N  QF++  F V  R +I WL
Sbjct: 1510 YFWISTLAM-CISPFIFNPHQFSWTDFFVDYREFIRWL 1546


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 47   TLMQHCIAVFVNNLLQFAFYSF*VVIRVYITWL 145
            ++M  C+A F+ N  QF +  F V  R +I WL
Sbjct: 1540 SIMALCVAPFLFNPHQFDWNDFFVDYREFIRWL 1572


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/57 (19%), Positives = 28/57 (49%)
 Frame = +3

Query: 156 SYCDHWFSFVIPYSFLSYTTSIIFEDHVTRVYHLPLDIVIQAVVSLFAVMWGVLNVA 326
           S+ + W +  + Y+  ++  +I        VYH+   ++ ++   ++  +W +LN A
Sbjct: 85  SWWEAWITVWVGYTIAAFILTIA--GRAGAVYHISFPVLSRSSFGIWGSLWPILNRA 139


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 326 RHIQHSPHDSKQTDHSLDDNIQW*VVNSCDVILK 225
           +HI + P D +  + SLDD   + + ++ D IL+
Sbjct: 164 KHITYKPKDEEFWNFSLDDMAMFDIPDTVDYILR 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,009
Number of Sequences: 5004
Number of extensions: 62774
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)