Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0460.Seq
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0802 + 23313763-23313835,23314100-23314152,23314651-233147...    39   0.006

>12_02_0802 +
           23313763-23313835,23314100-23314152,23314651-23314751,
           23315970-23316063
          Length = 106

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +3

Query: 258 PLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNAIKWETQNNLPSFYIFNHRGKALS 437
           P+D+++Q ++ L   MW  L V      +   +E N I      NL  F IFNHRG+AL 
Sbjct: 40  PMDVMMQLLLGLALCMWAGLAVPAKFLSVLPHSEENRIV-SLPANL-DFMIFNHRGRALP 97

Query: 438 YD 443
            D
Sbjct: 98  SD 99



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 157 VIVIIGFLSLFHTAFSATQHRSYLRITSQEFTT 255
           V+ ++G   L H A++  Q+R+ L+IT +EF++
Sbjct: 6   VLGVLGGALLAHAAYATIQYRAVLKITEEEFSS 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,465,140
Number of Sequences: 37544
Number of extensions: 357011
Number of successful extensions: 760
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)